Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun6456g00011 ATGACTACAGGATCATCGGTCTACTCTACCTCAATTCACCATTTCGAACTTTATACAGAAGGTTTTTCCGTACTAGCTCCTTCTACCTATACCTCAGTTGAAGCACCTAAAGGAGAATTTGGTGTCTTTCTGGTCACTGCGGAACTAACAACTCTATTAGAAAGTCGAATTACCAACTTTTACACAAATTTTCGAGTGGATGAGATCGGTCGAGTGGTCTCAGTTGGAGATGGGATTGCACGTGTTTATGGATTGAACGAGATTCAAGCTGGGGAATTGGTTGAATTTTCCAGCGGTGTGAAAGGTATAGCGTTGAATCTTGAGAATGAGAATGTCGGAATTGTTGTCTTTGGTAGTGATACCTCTATCAAAGAAGGAGATCTTGTCAAACGTACTGGATCTATTGTGGATGTTCCTGCGGGAAAGGCTATGCTAGGGCGTGTGGTCGACGCGTTGGGAGTACCTATTGATGGAAGAGGGGCTCTAAGCGATCACGAGCGAAGACGTGTCGAAGTGAAAGCCCCTGGGATTATAGAACGTAAATCAGTGCACGAGCCTATGCAAACTGGGTTAAAAGCGGTAGATAGCCTGGTTCTTATAGGCCGTGGTCAACGAGAACTTATAATCGGGGACCAACAAACTGGAAAAATAGCTATAGCTATCGATACCATATTAAACCAAAAGCAAATGAACTCAAGGGCCACCTCTGAGAGTGAGACATTGTATTGTGTCTATGTAGCGATTGGACAGAAACGCTCAACTGTGGCACAATTAGTTCAAATTCTTTCAGAAGCGAATGCTTTAGAATATTCCATTCTTGTAGCAGCCACCACTTCGGATCCAGCACCTCTGCAATTTCTGGCCCCATATTCTGGGTGTGCCATGGGGGAATATTTCCGCGATAATGGAATGCACGCATTAATAATCTATGATGATCTTAGTAAACAGGCCGTGGCATATCGACAAATGTCATTATTGTTACGCCGACCACCAGGCCGTGAGGCTTTCCCAGGCGATGTTTTCTATTTACATTCTCGTCTCTTAGAAAGAGCCGCAAAACGGTCGGACCAGACAGACGCAGGTAGCTTGACCGCCTTACCCGTCATTGAAACACAAGCTGGAGACGTATCGGCCTATATTCCCACCAATGTTATCTCCATTACGGATGGACAAATCTGTTTGGAAACAGAGCTCTTTTATCGCGGAATTAGACCTGCTATTAACGTCGGCTTATCTGTCAGTCGCGTCGGGTCTGCCGCTCAGTTGAAAGCTATGAAACAAGTCTGCGTGTCAACCAACCGGCCCGGGGACTATGCCAACCCTGGTGAACCGAACGCGCCTCTTTATCACCCGTTACAGGAGGACGGACAGAGGCGCCAAGAACTCTCTGATCGTCTTAGTATCAACATTATAGGAAGTGATATGCCCGACGAAGTTCGGGAGTCAATTCTCAAAACTCACAATTCGATAGAACTGAAGATCGAGAAAGCCCTTCGTTCAGACAGGTTTTCCGAGGATTCCCTTATGGAGAAAAGGCATCAGATAAGGGGGGTCCTCTTTTACCCTAATGGGAAGGCTTTATCATTACGGACTTATAATCAACACCTCCATTACATGGAGAACTTTGGAACCCACCGTAGCGTCCCTTATAAGAGGGTTATAAAAGCTTTATATAATCAAGACCTGGAACTTGAAAAGATTTAA 1704 0.4519 MTTGSSVYSTSIHHFELYTEGFSVLAPSTYTSVEAPKGEFGVFLVTAELTTLLESRITNFYTNFRVDEIGRVVSVGDGIARVYGLNEIQAGELVEFSSGVKGIALNLENENVGIVVFGSDTSIKEGDLVKRTGSIVDVPAGKAMLGRVVDALGVPIDGRGALSDHERRRVEVKAPGIIERKSVHEPMQTGLKAVDSLVLIGRGQRELIIGDQQTGKIAIAIDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVAQLVQILSEANALEYSILVAATTSDPAPLQFLAPYSGCAMGEYFRDNGMHALIIYDDLSKQAVAYRQMSLLLRRPPGREAFPGDVFYLHSRLLERAAKRSDQTDAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQVCVSTNRPGDYANPGEPNAPLYHPLQEDGQRRQELSDRLSINIIGSDMPDEVRESILKTHNSIELKIEKALRSDRFSEDSLMEKRHQIRGVLFYPNGKALSLRTYNQHLHYMENFGTHRSVPYKRVIKALYNQDLELEKI 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun6456g00011 567 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 190 414 IPR000194 GO:0005524
Vifaun6456g00011 567 NCBIfam F0F1 ATP synthase subunit alpha 47 430 IPR005294 GO:0015986|GO:0045261|GO:0046933
Vifaun6456g00011 567 Gene3D - 2 60 IPR029014 -
Vifaun6456g00011 567 Pfam ATP synthase alpha/beta family, beta-barrel domain 67 133 IPR004100 GO:0046034|GO:1902600
Vifaun6456g00011 567 Gene3D - 136 421 IPR027417 -
Vifaun6456g00011 567 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 51 135 IPR036121 GO:0046034|GO:1902600
Vifaun6456g00011 567 CDD ATP-synt_F1_alpha_N 68 133 - -
Vifaun6456g00011 567 Gene3D - 67 135 IPR023366 -
Vifaun6456g00011 567 CDD F1-ATPase_alpha_CD 135 417 IPR033732 GO:0032559
Vifaun6456g00011 567 PANTHER ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 45 431 IPR005294 GO:0015986|GO:0045261|GO:0046933
Vifaun6456g00011 567 Hamap ATP synthase subunit alpha [atpA]. 42 562 IPR005294 GO:0015986|GO:0045261|GO:0046933
Vifaun6456g00011 567 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 137 420 IPR027417 -
Vifaun6456g00011 567 ProSitePatterns ATP synthase alpha and beta subunits signature. 405 414 IPR020003 GO:0005524
Vifaun6456g00011 567 Pfam Respiratory-chain NADH dehydrogenase, 49 Kd subunit 8 51 IPR001135 GO:0016651|GO:0048038|GO:0051287
Vifaun6456g00011 567 FunFam ATP synthase subunit alpha 43 134 - -
Vifaun6456g00011 567 FunFam ATP synthase subunit alpha, mitochondrial 135 421 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun6456g00011 101 420 Primary Pumps ATPases(2) AT4G38510 26.140 8.24e-24 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun6456g00011 K02132 - gmx:15308608 722.235