Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun6455g00006 ATGGGAGGAGTGTGCAGAGGTTGGGAGGAAGACATTTACTGGACACACTTTCAATTCATCCATTTCACACAATTTCTCCGCTCTGATTTTCATCAACAACTTGCACTTCCCAAAACATTTTCTAACAATATAAAGAAGAACTTGCCAGAAAGTGTGACCCTAAAAGGTCCTGCTGGAATGCTTTGGAATATAGAGCTGACAACTAAAGGCGATACCTTGTACTTCACGCACGGTTGGCAACAATTCATGAAAGAACACTCTTTGAAAGAAAATGATTTCCTTGTCTTTAAGTACAACGGTGAATCGTTGTTTGAGGTTTTAATCTTCGATGGCGGGAGTTTATGTGAGAAGGCAGCTTGTTATTTTGTTCGAAAATGTTGGCAAGCTGTCAATACTGAACAAGGGGGTGGATGTTCTGGCAGGAAAAGGGACTCAGATAATTCTGTTGAAGAAGTTAAGACTCCTAATGGTGTTGATGAAGATGTTTCACCTGAGAAATCTTTGCATGTTAACAGTATCAGAGTGCCAATTGATGTGCCTGTCGAAACAACTAATGGCAAGACTTCTAATGCTGGTGTTGAATCTGCTTCTGCCGAGCCATTCATGCCTGATGCAGTCCCTGATACTGAGCCAAAAACTGTTCCCTCCCAAACAACTGCTAAACGGACTAGGAGGAGACCTGTTTGTGCCGATACATCTGTCCCGACAAAGAAGAGAGGAAGACGACCAAACACCGATAATTCTGTTGAAGACATTAACACTCCTAATGGTGTTGATGAAGGTGTTTCACCTGAGAAATCTTTGCATGTTAAGAGTATCAGAGTGCCAATTGATGTGCCTGTCGAAACAACTAATGGCAAGACTTCTAATGCTGGTGTTGAATCTGCTTCTGCCGAGCCATTCATACCTGATGCAGTCCCTGATACTGAGCCAAAAACTGTTCCCTCCCAAACAACTGCTAAACGGATGAGGAGGAGACCTGTTTGTGCCGAATCGTCTGTCCCGACAAAGAAGAGAGGAAGACGACCAAAAACCGATAATTCTGTTGAAGACATTAACACTCCAAATGGTGTTGATGAAGATGTTTCACCTGAGAAATCTTTGCATGTTAACAGTATCAGAGTGCCAATTGATGTGCCTGTCGAAACAACTAATGGCAAGACTTCTAATGCTGGTGTTGAATCTGCTCCCGCCGAGCAATTCATGTCTGATGCAGTCACAGATACCGAGCCAAAAACTGTTCCCTCCAAAATAACGGGTAAACGGACGAGGAGGAAGCCTGTTTATGCCGATATGTCTGTCCCAATTAAGAAGAGAGGAAGACCAGCAAAACCCCCTAATTCTCACAAGAGAGCTCATGATTGTGTGTCTGGTGTTGAACTTTCTCCCAAGGTTTCTCCGAAGGCCTCTCCAAAGGTTGGATTTCGGACCAAGGAACTATATACTTCAAATAGGAGGCCTGTCACAAAAAATGAGATTGAAAATACTCTTCAGTTGGCCCAGGCAACATGTGCCGAAGACACCTTGCTTGTAACTATGCGACCTACGCATGTATACAAGAGATTCTTCGTGTCATTCCCTAATAAGTGGAGAATAAACCATCTTTCTCCGTCATCTCAAGATGTGATATTACGTATGGGTAAGAGTGAATGGCTTGGGAAATACCGCTATCATAATATTCGTAACAATGGAGGACTTACTGGTGGGTGGAAATATTTTGCACTTGAAAATAACCTTGAAGAGTTTGATGTGTGTTTGTTTAAGCCTGCTGGTTATATGGACAAAACTTTGATCTTAGAGATTACCATTTTTAGAGTTGTTGAGGAGATTACTCCTCTTACTGCGGTGAATTCTCCGCAAAAGAAGAGTTCAATTAAGAAAACACCAACCGGACTGAATTCTCGGGAAAAGAAGAGTTCATTTAAGAAAACACCTACCAGTGCTGTCCAAACAGAACTCGAGTCCTTTGAACCACTAGTAAAGAAGAGGGGAGTTAACATAACAGTGACCAGTGCTGTACAAACAGAACTTGACTCCATTGAAGGTGCGTAA 2052 0.4245 MGGVCRGWEEDIYWTHFQFIHFTQFLRSDFHQQLALPKTFSNNIKKNLPESVTLKGPAGMLWNIELTTKGDTLYFTHGWQQFMKEHSLKENDFLVFKYNGESLFEVLIFDGGSLCEKAACYFVRKCWQAVNTEQGGGCSGRKRDSDNSVEEVKTPNGVDEDVSPEKSLHVNSIRVPIDVPVETTNGKTSNAGVESASAEPFMPDAVPDTEPKTVPSQTTAKRTRRRPVCADTSVPTKKRGRRPNTDNSVEDINTPNGVDEGVSPEKSLHVKSIRVPIDVPVETTNGKTSNAGVESASAEPFIPDAVPDTEPKTVPSQTTAKRMRRRPVCAESSVPTKKRGRRPKTDNSVEDINTPNGVDEDVSPEKSLHVNSIRVPIDVPVETTNGKTSNAGVESAPAEQFMSDAVTDTEPKTVPSKITGKRTRRKPVYADMSVPIKKRGRPAKPPNSHKRAHDCVSGVELSPKVSPKASPKVGFRTKELYTSNRRPVTKNEIENTLQLAQATCAEDTLLVTMRPTHVYKRFFVSFPNKWRINHLSPSSQDVILRMGKSEWLGKYRYHNIRNNGGLTGGWKYFALENNLEEFDVCLFKPAGYMDKTLILEITIFRVVEEITPLTAVNSPQKKSSIKKTPTGLNSREKKSSFKKTPTSAVQTELESFEPLVKKRGVNITVTSAVQTELDSIEGA 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun6455g00006 683 SMART B3_2 22 112 IPR003340 GO:0003677
Vifaun6455g00006 683 SMART B3_2 509 607 IPR003340 GO:0003677
Vifaun6455g00006 683 Gene3D - 488 609 IPR015300 -
Vifaun6455g00006 683 MobiDBLite consensus disorder prediction 324 348 - -
Vifaun6455g00006 683 Pfam B3 DNA binding domain 29 110 IPR003340 GO:0003677
Vifaun6455g00006 683 Pfam B3 DNA binding domain 511 600 IPR003340 GO:0003677
Vifaun6455g00006 683 MobiDBLite consensus disorder prediction 132 165 - -
Vifaun6455g00006 683 SUPERFAMILY DNA-binding pseudobarrel domain 18 110 IPR015300 -
Vifaun6455g00006 683 MobiDBLite consensus disorder prediction 281 364 - -
Vifaun6455g00006 683 SUPERFAMILY DNA-binding pseudobarrel domain 510 597 IPR015300 -
Vifaun6455g00006 683 Gene3D - 15 115 IPR015300 -
Vifaun6455g00006 683 MobiDBLite consensus disorder prediction 410 471 - -
Vifaun6455g00006 683 ProSiteProfiles B3 DNA-binding domain profile. 509 607 IPR003340 GO:0003677
Vifaun6455g00006 683 MobiDBLite consensus disorder prediction 181 269 - -
Vifaun6455g00006 683 CDD B3_DNA 512 605 IPR003340 GO:0003677
Vifaun6455g00006 683 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 26 610 IPR044837 -
Vifaun6455g00006 683 ProSiteProfiles B3 DNA-binding domain profile. 19 112 IPR003340 GO:0003677
Vifaun6455g00006 683 MobiDBLite consensus disorder prediction 618 647 - -
Vifaun6455g00006 683 MobiDBLite consensus disorder prediction 139 165 - -
Vifaun6455g00006 683 CDD B3_DNA 22 110 IPR003340 GO:0003677
Vifaun6455g00006 683 MobiDBLite consensus disorder prediction 224 246 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun6455g00006 464 605 REM Transcription Factor Family AT4G33280 32.667 2.90e-20 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vifaun6455g00006 B3 4.1e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun6455g00006 - - psat:127106368 553.518