Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun6455g00005 ATGGGAGGAGTGTGCAGAGGTTGGGAGGAAGACATTTACTGGACACACTTTCAATTCATCCATTTCACACAATTTCTCCGCTCTGATTTTCATCAACAACTTGCACTTCCCAAAACATTTTCTAACAATATAAAGAAGAACTTGCCAGAAAGTGTGACCCTAAAAGGTCCTGCTGGAATGCTTTGGAATATAGAGCTGACAACTAAAGGCGATACCTTGTACTTCACGCACGGTTGGCAACAATTCATGAAAGAACACTCTTTGAAAGAAAATGATTTCCTTGTCTTTAAGTACAACGGTGAATCGTTGTTTGAGGTTTTAATCTTCGATGGCGGGAGTTTATGTGAGAAGGCAGCTTGTTATTTTGTTCGAAAATGTTGGCAAGCTGTCAATACTGAACAAGGGGGTGGATGTTCTGGCAGGAAAAGGGACTCAGATAATTCTGTTGAAGAAGTTAAGACTCCTAATGGTGTTGATGAAGATGTTTCACCTGAGAAATCTTTGCATGTTAACAGTATCAGAGTGCCAATTGATGTGCCTGTCGAAACAACTAATGGCAAGACTTCTAATGCTGGTGTTGAATCTGCTCCCGCCGAGCAATTCATGTCTGATGCAGTCACAGATACCGAGCCAAAAACTGTTCCCTCCAAAATAACGGGTAAACGGACGAGGAGGAAGCCTGTTTATGCCGATATGTCTGTCCCAATTAAGAAGAGAGGAAGACCAGCAAAACCCCCTAATTCTCACAAGAGAGCTCATGATTGTGTGTCTGGTGTTGAACTTTCTCCCAAGGTTTCTCCGAAGGCCTCTCCAAAGGTTGGATTTCGGACCAAGGAACTATATACTTCAAATAGGAGGCCTGTCACAAAAAATGAGATTGAAAATACTCTTCAGTTGGCCCAGGCAACATGTGCCGAAGACACCTTGCTTGTAACTATGCGACCTACGCATGTATACAAGAGATTCTTCGTGTCATTCCCTAATAAGTGGAGAATAAACCATCTTTCTCCGTCATCTCAAGATGTGATATTACGTATGGGTAAGAGTGAATGGCTTGGGAAATACCGCTATCATAATATTCGTAACAATGGAGGACTTACTGGTGGGTGGAAATATTTTGCACTTGAAAATAACCTTGAAGAGTTTGATGTGTGTTTGTTTAAGCCTGCTGGTTATATGGACAAAACTTTGATCTTAGAGATTACCATTTTTAGAGTTGTTGAGGAGATTACTCCTCTTACTGCGGTGAATTCTCCGCAAAAGAAGAGTTCAATTAAGAAAACACCAACCGGACTGAATTCTCGGGAAAAGAAGAGTTCATTTAAGAAAACACCTACCAGTGCTGTCCAAACAGAACTCGAGTCCTTTGAACCACTAGTAAAGAAGAGGGGAGTTAACATAACAGTGACCAGTGCTGTACAAACAGAACTTGACTCCATTGAAGGTGCGTAA 1452 0.4153 MGGVCRGWEEDIYWTHFQFIHFTQFLRSDFHQQLALPKTFSNNIKKNLPESVTLKGPAGMLWNIELTTKGDTLYFTHGWQQFMKEHSLKENDFLVFKYNGESLFEVLIFDGGSLCEKAACYFVRKCWQAVNTEQGGGCSGRKRDSDNSVEEVKTPNGVDEDVSPEKSLHVNSIRVPIDVPVETTNGKTSNAGVESAPAEQFMSDAVTDTEPKTVPSKITGKRTRRKPVYADMSVPIKKRGRPAKPPNSHKRAHDCVSGVELSPKVSPKASPKVGFRTKELYTSNRRPVTKNEIENTLQLAQATCAEDTLLVTMRPTHVYKRFFVSFPNKWRINHLSPSSQDVILRMGKSEWLGKYRYHNIRNNGGLTGGWKYFALENNLEEFDVCLFKPAGYMDKTLILEITIFRVVEEITPLTAVNSPQKKSSIKKTPTGLNSREKKSSFKKTPTSAVQTELESFEPLVKKRGVNITVTSAVQTELDSIEGA 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun6455g00005 483 Gene3D - 288 409 IPR015300 -
Vifaun6455g00005 483 MobiDBLite consensus disorder prediction 132 165 - -
Vifaun6455g00005 483 MobiDBLite consensus disorder prediction 237 271 - -
Vifaun6455g00005 483 MobiDBLite consensus disorder prediction 418 447 - -
Vifaun6455g00005 483 ProSiteProfiles B3 DNA-binding domain profile. 309 407 IPR003340 GO:0003677
Vifaun6455g00005 483 Gene3D - 15 115 IPR015300 -
Vifaun6455g00005 483 ProSiteProfiles B3 DNA-binding domain profile. 19 112 IPR003340 GO:0003677
Vifaun6455g00005 483 SMART B3_2 309 407 IPR003340 GO:0003677
Vifaun6455g00005 483 SMART B3_2 22 112 IPR003340 GO:0003677
Vifaun6455g00005 483 SUPERFAMILY DNA-binding pseudobarrel domain 310 397 IPR015300 -
Vifaun6455g00005 483 SUPERFAMILY DNA-binding pseudobarrel domain 18 110 IPR015300 -
Vifaun6455g00005 483 Pfam B3 DNA binding domain 29 110 IPR003340 GO:0003677
Vifaun6455g00005 483 Pfam B3 DNA binding domain 311 400 IPR003340 GO:0003677
Vifaun6455g00005 483 MobiDBLite consensus disorder prediction 139 165 - -
Vifaun6455g00005 483 CDD B3_DNA 312 405 IPR003340 GO:0003677
Vifaun6455g00005 483 CDD B3_DNA 22 110 IPR003340 GO:0003677
Vifaun6455g00005 483 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 26 410 IPR044837 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun6455g00005 5 405 REM Transcription Factor Family AT4G33280 33.415 1.57e-66 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vifaun6455g00005 B3 2.4e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun6455g00005 - - tpra:123885991 673.7