Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun6455g00003 ATGGGAGGAAGAGGAGCAGTGTGCAGAGGTTGGGAGGAAGACATTTACTGGACGCACTTTCAATTCATCCATTTCACCCAATTCCTCCGCTCTGATTTTCATCAACAACTTGCACTTCCCAAAACATTTTCTGACAATATAAAGAAGAATTTACCAGAAAGTGTGACCCTAAAAGGTCCTAGTGGAATGCTGTGGAATATAGAGTTGACAACTAGAGACGATACCTTTTACTTCAGGCACGGATGGAAACAATTCGTGAAAGAACACTCTTTGAAAGAAAATGACTTCCTTGTCTTCAAGTACAACGGTGAATCGTTGTTTGAGGTTTTAATCTTTAATAGCGAGAGTTTATGTGAGAAGGCAGCTTGTTATTTTGTTCGAAAATGTCAACATGCTGCCAATACTGAACAAGGGGGTGGATGTTCTGGAAAGAAAAGGGACTCAGATAATTCTGTTGAAGAAGTTAAGACTCCTAATGGTGTTGATGAAGGTGTTTCACCTGAGAAATCTTTGCATGTTAAGAGTATCAGAGTGCCAATTGATGTGCCTGTCGAAACAACTAATGGCAAGACTTCTAATGCTGGTGTTGAATCTGCTTCTGCCGAGGAATTCATGTCTGATGCAGTCACTGACACTGAGCCAATAATTGTTCCCTCCAAAACAACTGGTAAACGGACGAGGAGGCCTGTTTATGCCGATACATCTTTCCCGAGTAAGAAGAAAGGAAGACCACCAAAAACCGCTAGTTCTCACGAGAGAGATCGTAATTGTGTGTCTGGTGCTGAAATTTCTCCCAAGGTTTCTCCTAAGGCCTCTCCAAAAGTTGGATCTGGGACCAAGGAACTATATACTTCAAATAGAAGGCCTGTCACAAAAAATGAGATTGAAAATACACTTCAGTTGGCCCAGGCAAAATGTGCCGAAGACACCTTGCTTGTAACTATGCAAGCCACGCATGTATACAAGAGATTCTTCGTGTCATTCCCTAATAAGTGGATAATAAACCATCTTTCTCCGTCGTCTCAATATGTGATATTACGCATGGGTAAGAAGGAATGGCTTGGGAAATACCGCTATCATAATATTGGTAACAATGGAGGACTTACCGGTGGGTGGAAATATTTTGCGCTCGAAAATAACCTCGAAGAGTTTGATGTATGTTTGTTCAAGCCCGATGGTTATATGGACAAAACGTTGATCTTAGAAGTGACCATTTTTAGAGTTGTTGAGCAGATTACACCACTTACTCCGGTAAATTCTCCGGGAAAGAAAAGGTCAATTAAGAAAACACCAACAGGTGCTGTCCCAACAGAACTCGAGTCCTTTGAACCACTAGTAAAGAAGAGGGGACTTAACATAAAACTGACCAGTGCTGTCCAAACAGGACGTGACTCCATTGAAGATGCATCATTGTAA 1416 0.4153 MGGRGAVCRGWEEDIYWTHFQFIHFTQFLRSDFHQQLALPKTFSDNIKKNLPESVTLKGPSGMLWNIELTTRDDTFYFRHGWKQFVKEHSLKENDFLVFKYNGESLFEVLIFNSESLCEKAACYFVRKCQHAANTEQGGGCSGKKRDSDNSVEEVKTPNGVDEGVSPEKSLHVKSIRVPIDVPVETTNGKTSNAGVESASAEEFMSDAVTDTEPIIVPSKTTGKRTRRPVYADTSFPSKKKGRPPKTASSHERDRNCVSGAEISPKVSPKASPKVGSGTKELYTSNRRPVTKNEIENTLQLAQAKCAEDTLLVTMQATHVYKRFFVSFPNKWIINHLSPSSQYVILRMGKKEWLGKYRYHNIGNNGGLTGGWKYFALENNLEEFDVCLFKPDGYMDKTLILEVTIFRVVEQITPLTPVNSPGKKRSIKKTPTGAVPTELESFEPLVKKRGLNIKLTSAVQTGRDSIEDASL 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun6455g00003 471 Gene3D - 290 412 IPR015300 -
Vifaun6455g00003 471 Gene3D - 18 118 IPR015300 -
Vifaun6455g00003 471 SUPERFAMILY DNA-binding pseudobarrel domain 21 114 IPR015300 -
Vifaun6455g00003 471 MobiDBLite consensus disorder prediction 215 289 - -
Vifaun6455g00003 471 MobiDBLite consensus disorder prediction 245 259 - -
Vifaun6455g00003 471 CDD B3_DNA 314 407 IPR003340 GO:0003677
Vifaun6455g00003 471 Pfam B3 DNA binding domain 314 401 IPR003340 GO:0003677
Vifaun6455g00003 471 Pfam B3 DNA binding domain 32 113 IPR003340 GO:0003677
Vifaun6455g00003 471 SUPERFAMILY DNA-binding pseudobarrel domain 312 399 IPR015300 -
Vifaun6455g00003 471 CDD B3_DNA 25 113 IPR003340 GO:0003677
Vifaun6455g00003 471 ProSiteProfiles B3 DNA-binding domain profile. 311 409 IPR003340 GO:0003677
Vifaun6455g00003 471 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 29 412 IPR044837 -
Vifaun6455g00003 471 MobiDBLite consensus disorder prediction 134 167 - -
Vifaun6455g00003 471 SMART B3_2 311 409 IPR003340 GO:0003677
Vifaun6455g00003 471 SMART B3_2 25 115 IPR003340 GO:0003677
Vifaun6455g00003 471 ProSiteProfiles B3 DNA-binding domain profile. 22 115 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun6455g00003 8 407 REM Transcription Factor Family AT4G33280 33.333 8.72e-68 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vifaun6455g00003 B3 7e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun6455g00003 - - tpra:123885991 682.174