Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun6455g00002 ATGGGAGGAGTGTGCAGAGCTTGGGAAGAAGACATTTACTGGACACATTTTCAATTCATCCATTTCACCCAATTTCTCCGCTCTGATTTTGATCAACAACTTGCACTTCCCAAAACATTTTCTAACAATATAAAGAAGAACTTGCCAGAAAGTGTGACCCTAAAAGGTCCTGCTGGAATGCTTTGGAATATAGAACTGACAACTAAAGGCGATACCTTGTACTTCACGCACGGTTGGCAACAATTCATGAAAGAACACTCTTTGAAAGAAAATGATTTCCTTGTCTTTAAGTACAACGGTGAATCGTTGTTTGAGGTTTTAATCTTCGATGGCGGGAGTTTATGTGAGAAGGCAGCTTGTTATTTTGTTCGAAAATGTTGGCAAGCTGCCAATACTGAACAAGGGGGTGGATGTTCGGGCAAGAAAAGGGACTCAGATAACTCTGTTGAAGAAGTTAACACTCCTAATGGTGTTGATGAAGGTGTTTCGCCTGAGAAATCTTTGCACCTTAATAGTATCAGAGTGCCAATTGATGTGCCTGTCGAAACAACTAATGGCAAGACTTCTAATGCTGGTGTTGAATCTGCTTCTGCCGAGCCATTCATGCCTGATGCAGTCCCTGATACTGAGCCAAAAACTGTTCCCTCCCAAACAACTGCTAAACGGACGAGGAGGAGACCTGTTTGTGCCGATACGTCTGTCCCGACAAAGAAGAGAGGAAGACGACCAAAAACCGATAATTCTGTTGAAGACATTAACACTCCTAATGGTGTTGATGAAGGTGTTTCACCTGAGAAATCTTTGCATGTTAACAGTATCAGAGTGCCAATTGATCTGTCTGTCGAAACAACTAATGGCAAGACTTCTAATGCTGGTGTTGAATCTGCTCCCGCCGAGCAATTCATGTCTGATGCAGTCACAGATACCGAGCCAAAAACTGTTCCCTCCAAAACAACGGTTAAACGGACGAGGAGGAAGCCTGTTTATGCCAATATGTCTGTCCCAATTAAGAAGAGAGGAAGACCAGCAAAAACCCCTAATTCTCACAAGAGAGCTCATGATTGTGTGTCTGGTGCTGAACTTTCTCCCAAGGTTTCTCCTAAGGCCTCTCCAAAGGTTGGATTTTGGACCAAGGAACTATATACTTCAAATAGGAGGCCTGTCACAAAAAATGAGATTGAAAATACACTTCAGTTGGCCCAGGCAAAATGTGCCAAAGACACCTTGCTTGTAACTATGCGACCTACGCATGTATACAAGAGATTCTTCATGTCATTCCCTAATAAGTGGAGAATAAACCATCTTTCTCCGTCATCTCAAGATGTGATATTACGTATGGGTAAGAGTGAATGGCTTGGGAAATACTGCTATCATAATATTCGCAACAATGGAGGACTTACTGGTGGGTGGAAATATTTTGCACTTGAAAATAACCTTGAAGAGTTTGATGTGTGTTTGTTTAAGCCTGCTGGTTATATGGACAAAACTTTGATCTTAGACATTACCATTTTTAGAGTTGTTGAGGAGATTACTCCTCTTACTGCGGTGAATTCTCCGCAAAAGAAGAGTTCAATTAAGAAAACACCAACCGGACTGAATTCTCGGGAAAAGAAGAGTTCATTTAAGAAAACACCTACCAGTGCTGTCCAAACAGAACTCGAGTCCTTTGAACCACTAGTAAAGAAGAGGGGAGTTAACATAACAGTGGCCAGTGCTGTCCAAACAGAACTTGACTCCATTGAAGGTGCTTAA 1752 0.4195 MGGVCRAWEEDIYWTHFQFIHFTQFLRSDFDQQLALPKTFSNNIKKNLPESVTLKGPAGMLWNIELTTKGDTLYFTHGWQQFMKEHSLKENDFLVFKYNGESLFEVLIFDGGSLCEKAACYFVRKCWQAANTEQGGGCSGKKRDSDNSVEEVNTPNGVDEGVSPEKSLHLNSIRVPIDVPVETTNGKTSNAGVESASAEPFMPDAVPDTEPKTVPSQTTAKRTRRRPVCADTSVPTKKRGRRPKTDNSVEDINTPNGVDEGVSPEKSLHVNSIRVPIDLSVETTNGKTSNAGVESAPAEQFMSDAVTDTEPKTVPSKTTVKRTRRKPVYANMSVPIKKRGRPAKTPNSHKRAHDCVSGAELSPKVSPKASPKVGFWTKELYTSNRRPVTKNEIENTLQLAQAKCAKDTLLVTMRPTHVYKRFFMSFPNKWRINHLSPSSQDVILRMGKSEWLGKYCYHNIRNNGGLTGGWKYFALENNLEEFDVCLFKPAGYMDKTLILDITIFRVVEEITPLTAVNSPQKKSSIKKTPTGLNSREKKSSFKKTPTSAVQTELESFEPLVKKRGVNITVASAVQTELDSIEGA 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun6455g00002 583 MobiDBLite consensus disorder prediction 518 548 - -
Vifaun6455g00002 583 SUPERFAMILY DNA-binding pseudobarrel domain 18 110 IPR015300 -
Vifaun6455g00002 583 Gene3D - 388 509 IPR015300 -
Vifaun6455g00002 583 MobiDBLite consensus disorder prediction 338 363 - -
Vifaun6455g00002 583 ProSiteProfiles B3 DNA-binding domain profile. 19 112 IPR003340 GO:0003677
Vifaun6455g00002 583 Pfam B3 DNA binding domain 31 110 IPR003340 GO:0003677
Vifaun6455g00002 583 Pfam B3 DNA binding domain 411 500 IPR003340 GO:0003677
Vifaun6455g00002 583 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 27 510 IPR044837 -
Vifaun6455g00002 583 CDD B3_DNA 412 505 IPR003340 GO:0003677
Vifaun6455g00002 583 MobiDBLite consensus disorder prediction 132 264 - -
Vifaun6455g00002 583 SUPERFAMILY DNA-binding pseudobarrel domain 410 497 IPR015300 -
Vifaun6455g00002 583 Gene3D - 16 115 IPR015300 -
Vifaun6455g00002 583 ProSiteProfiles B3 DNA-binding domain profile. 409 507 IPR003340 GO:0003677
Vifaun6455g00002 583 SMART B3_2 22 112 IPR003340 GO:0003677
Vifaun6455g00002 583 SMART B3_2 409 507 IPR003340 GO:0003677
Vifaun6455g00002 583 MobiDBLite consensus disorder prediction 224 248 - -
Vifaun6455g00002 583 CDD B3_DNA 22 110 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun6455g00002 364 505 REM Transcription Factor Family AT4G33280 32.667 9.76e-20 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vifaun6455g00002 B3 1.4e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun6455g00002 - - psat:127106368 808.52