Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun6401g00001 ATGCAGTTTGATTCAGATTCAGACTCCGACGGATCTCACGTCTCCACAACCCCTCCAAGACAACCAAATCCACCACCACCATTACCACCAAAATCACCGCGTCCAGTTTCCAACAAAAAATCCAAATCCAAAACCAAACCCTCAAAATCCAATAAACCCCCTTCAAAACCTCCCGAAACTCTCATCCAACAACAGGACAATTTCCCACTCCCTTCCATCACTTCCCTTCCTTTCCAAATCCGACTAAGATCTTCCGACGGACCTTCAACTTCATCTTCATCTTCATCTTCCCACTCCATGGAAACCCTCCCTGCTGGCTTCTTCTCCAAATCAATTTCATTCTCCAAAATTCGTAAACCCTTACTCAATCTAGAACCTTCCGAATCCGAACCACTTCTTAACTCCCCCAAAGCCACCGCGGAGAAACCTCCCAATTTGATTGCTGCTAAGAAGCTTCCCAATTTGATTGCTGCTAAGAAGCTTCCCAATTTGATTGCTGCTAAGAAACCTCCTAATTTGATTGGTGCTAGTTTGCCAACACCGACAGTGAAGGTACTACGAGGCTCCGGTGAAGGAAATTTTGTGAAATTGAATTTGAGTGGTAAGAGGAAAAAGTTTTTGAACAAAGGCTGGAAGAAAAATGGAAAATTTGGCAGTGGTAAAAGGTATAGAAGAAATGGTTATAGTAATAGTAGTAGTAAAAGTAAACGTACCAAATTGGAAGGTGAAGGGGAGGATAATGAGGAGGATGGTTTGGGTTTGGAGAATGCAAAGCAACAACAGAAGCAAAAGGGTTGGGAGATTGAGTGCAAAGTGTTGGAGGAGGCCGTGTTAGCAGCAAGAGGTGAAGCTTCTGATGAGAATTTGATGAAGCTGTTGAAATTGATTCATGGTTATGATTCTTTTCGAGAGGGGCAGCTTGAGGCTATCAAGAATGTTCTTGCTGGGAAGTCTACTATGCTTATTTTGCCCACTGGTGCAGGGAAGTCGTTGTGTTATCAGTTGAGTGCGTTGATTTTGCCCGGCATTACGCTTGTTGTTAGTCCATTGCTAGCTTTGATGATTGATCAGCTTAAGCAATTGCCTCCACTCATTCCTGGTGCTCTCCTAAGCAGTGCGCAAACGCTTGAAGAATCATCTGAAACTCTCAGCCAGCTTCGGCAAGGCACAATAAAGGTGCTTTTTGTTTCACCCGAGCGGTTTTTGAATAAGGAGTTTCTGTCTGCTATCTCTGCTGGGTCAGCTGTCTCACTCGTTGTTATTGACGAAGCACATTGTATATCTGAATGGTCTCACAATTTCCGACCTTCATTCATGAGACTTAGAGCATCACTACTTCATAGAAGTCTTAATGTAGGTTCTGTTCTCGCAATGACAGCAACTGCTACAACCACAACCTTAGATGCCATCATGTCTGCCCTAGATATTCCTTTTACAAATCTTATTCAGAATGCACACTTAAGGGACAATTTGCGTTTGTCGGCGTCTTTGATAAAAAATAGAATGAAAGACCTACTGGTTCTGATAAAGTCTCCTCCTTTTGCGGATGTTAAAAGCATCATAGTATACTGCAAATTTCAGTCTGAAACTGATCAAATTAGCAGATACTTGAATGATAACAATATCTCGGCAAAGAGTTATCATAGTGGTATTTTTGCAAAGGAACGTGGCAACGTACAGGAGTTGTTTGCTTCAAACAAGATCAGAGTGGTTGTTGCAACTGTGGCATTTGGTATGGGACTAGATAAAAGAGATGTTGGAGCAGTAATTCATTACAGTTTACCTGGAAGTCTGGAAGAGTATGTACAGGAAATAGGACGTGCTGGGAGAGATGGAAGGTTGTCCTACTGTCACCTATTTTATGATGATGAGATGTATTTCAAACTCCGTAGTCTAATGTACAGTGAAGGAGTAGATGAATATGCAGTGAATAAATTTCTGTCTGAAGTGTTTCCTGCTGACAAAAGCTCCTGTGGGAAAATATGTTCGTTAATCAAAGAATCTGCTTCACGCAGATTTGACATGAAGGAAGAGGTGATTCTCACAGTTTTGACACGCTTAGAGCTGGGTGATGTGCAGTACTTACATTTACTTCCACAGACAAATGTTACTTGTGTTCTGAATTTTTACAAGACTCCGGCTGTGTCCCTTGCCCAAAAGGTTTCTGCTATTGCTGTGATTCTGAAAAGATCTGAAAATAGACACGGACAACATACTTTTGATCTTCCAACTGTGGCAAATGACATGGGGGTCACACCAGTTGAATTAACAAATCAGTTGTATGACCTAAAGTTGAAGGGAGAAATAACTTATGAAATGAAAGACATGGCCTACTGTTATAGGATTCTTGAAGTCCCAACAGACTTATTGTCTCTATCGGCAGATATTACCAAATGGTTATCTGAAGTTGAAAGTTGTAAGGTGCGGAAAATGGATGCGATGTTTAATGCTGCATATTTTGCAGTCAATCTATGTGATAAGATGAACGGTTGCAGTAGTGCCGATCACACTTCATGCTTGCAAAGGATAATATTGGACTACTTTGCTGGAATTGATAATATTGATTTCTGCAAGAAAATTGATCAAAGCAGTCCTTTCCTGCGGCCAGATATAAAGGTTTTTCTACAGAGCAATTCACATGCTCGCTTTACACCAAGAGCTGTTGCGAGGGTTATGCACGGAATTGCAAGCCCAGCCTACCCTTATACAATATGGGGTAAAACCCATTTCTGGGGAAGGTATACCAAGATAGACTTTAAAGTGGTGATGGAAGCAGCAAAGGAAGAACTTAAAAAATTAGTTGGGAAGGATATTCTGTAG 2820 0.4142 MQFDSDSDSDGSHVSTTPPRQPNPPPPLPPKSPRPVSNKKSKSKTKPSKSNKPPSKPPETLIQQQDNFPLPSITSLPFQIRLRSSDGPSTSSSSSSSHSMETLPAGFFSKSISFSKIRKPLLNLEPSESEPLLNSPKATAEKPPNLIAAKKLPNLIAAKKLPNLIAAKKPPNLIGASLPTPTVKVLRGSGEGNFVKLNLSGKRKKFLNKGWKKNGKFGSGKRYRRNGYSNSSSKSKRTKLEGEGEDNEEDGLGLENAKQQQKQKGWEIECKVLEEAVLAARGEASDENLMKLLKLIHGYDSFREGQLEAIKNVLAGKSTMLILPTGAGKSLCYQLSALILPGITLVVSPLLALMIDQLKQLPPLIPGALLSSAQTLEESSETLSQLRQGTIKVLFVSPERFLNKEFLSAISAGSAVSLVVIDEAHCISEWSHNFRPSFMRLRASLLHRSLNVGSVLAMTATATTTTLDAIMSALDIPFTNLIQNAHLRDNLRLSASLIKNRMKDLLVLIKSPPFADVKSIIVYCKFQSETDQISRYLNDNNISAKSYHSGIFAKERGNVQELFASNKIRVVVATVAFGMGLDKRDVGAVIHYSLPGSLEEYVQEIGRAGRDGRLSYCHLFYDDEMYFKLRSLMYSEGVDEYAVNKFLSEVFPADKSSCGKICSLIKESASRRFDMKEEVILTVLTRLELGDVQYLHLLPQTNVTCVLNFYKTPAVSLAQKVSAIAVILKRSENRHGQHTFDLPTVANDMGVTPVELTNQLYDLKLKGEITYEMKDMAYCYRILEVPTDLLSLSADITKWLSEVESCKVRKMDAMFNAAYFAVNLCDKMNGCSSADHTSCLQRIILDYFAGIDNIDFCKKIDQSSPFLRPDIKVFLQSNSHARFTPRAVARVMHGIASPAYPYTIWGKTHFWGRYTKIDFKVVMEAAKEELKKLVGKDIL 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun6401g00001 939 Gene3D - 273 478 IPR027417 -
Vifaun6401g00001 939 MobiDBLite consensus disorder prediction 55 102 - -
Vifaun6401g00001 939 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 501 651 IPR001650 -
Vifaun6401g00001 939 NCBIfam RecQ family ATP-dependent DNA helicase 292 649 IPR004589 GO:0004386|GO:0006310
Vifaun6401g00001 939 MobiDBLite consensus disorder prediction 1 17 - -
Vifaun6401g00001 939 FunFam ATP-dependent DNA helicase Q4 270 480 - -
Vifaun6401g00001 939 Pfam Helicase conserved C-terminal domain 517 611 IPR001650 -
Vifaun6401g00001 939 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 417 426 IPR002464 -
Vifaun6401g00001 939 MobiDBLite consensus disorder prediction 18 34 - -
Vifaun6401g00001 939 SMART helicmild6 531 612 IPR001650 -
Vifaun6401g00001 939 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 342 624 IPR027417 -
Vifaun6401g00001 939 CDD SF2_C_RecQ 488 621 - -
Vifaun6401g00001 939 Pfam DEAD/DEAH box helicase 305 466 IPR011545 GO:0003676|GO:0005524
Vifaun6401g00001 939 SMART ultradead3 298 494 IPR014001 -
Vifaun6401g00001 939 MobiDBLite consensus disorder prediction 1 102 - -
Vifaun6401g00001 939 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 310 480 IPR014001 -
Vifaun6401g00001 939 PANTHER DNA HELICASE RECQ FAMILY MEMBER 279 803 - -
Vifaun6401g00001 939 Gene3D - 488 671 IPR027417 -
Vifaun6401g00001 939 MobiDBLite consensus disorder prediction 210 260 - -
Vifaun6401g00001 939 FunFam ATP-dependent DNA helicase Q-like 5 488 679 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun6401g00001 517 644 Eukaryotic Initiation Factors Gene Family AT3G19760 30.000 5.80e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun6401g00001 K10730 - gmx:100811214 1189.1