Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun6353g00004 ATGAAAATACCTAGCCCTACACGGAAGCAATCTGTTGGGGATCGTCACATGATCTCACCCACTCGGCACAATATGTCCCGTTCAGCGCGGAGGAGGAAAAACACTGGTCATTGGTGGTTGTCATCGATATCATGGAGGATGAAGAAGGATATTGACTCATATGACTTGACTCCTCAAACTAACCTCTCTTCCAATAGTCCCTACTACAAGGGTCTCACTGATCAATCTCTTGCTATCACGCCGACCCCTCATGAAGAAGACTATGATCCCGACAACACTGCCTCGCCATCACTCCGACCTCTCCTCCTTTCATCATCACCAATCAGTAGTCCTTACTACAAAGGTCTTACGGATTATTCTCTCGTCGTCGATGCTTCTTGGACCGCTACCCCTCATTCAATTCCTCATCACAGTTCATCTCTTTCTTGTCACCATGACTCAAGTCCATACTATAGGGGTCTTATTGCTCTTCCTATTTCTGCCTCCCCCTCCTCTCTCTACTCCCTCAACATCAATTTCAATCCCTCCACTACCACGTCTGCCCAATCATCAACTCGTGATTTTGTTGTCTTTTTAAGTCCAGAAGATCAATCACTGATGGTGACAGAGCCGGAAGCAACTTTAGAGGAGGGGATAGTGTTGATCCATCCCGGGATCCAGGGGAAGCCTTTGAGGGTTAATGATCAGTTGTCATCACAAGCAACTTTGGAGGAGATGGATGATGATGATGATGACGACGACGATAACAATAATATTGAATGTGAGAAGCCTTTGAGGGTTAATATTGAATCGGAAACAATTCTAGAGAAAACTATTTTGGAAAATGCAGTGTTGTTGGTTGAAGAGAATACTAGGAAGCCTTTGAGGGTTAATATTGAATCGGAAACAATTCTAGAGAAAACTATTTTGGAAGATGCAGTGTTGTTGGTTGAAGAGAATACTAGGAAGCCTTTGAGGGAGAAAGTAACATCAGATTCGGAGACAGTATTGTTACAGCAAGAAAATGATGACATAACAGATTTAGGTATAGAGGAGTTGGAATTGGTGTTTGAACAAGAGAAGACATTGAGAGAGAGTGATGTGTCACAAGGTAGGAACGAGAAAGCACTGATAAACACGGAGAAAACAGATTTGAAAGAGGAACTGGGAGATTTTTGGTTGGGTGGTCAAAAGACTGTTTCTGAACAAACAGTGGCATTGGAAGTACCTTGTGAGCACATGTTGAAGCACACAGCTGAGGAAGGAAATCTATATGAGTATCTGTGGGCAACCAAATACCAGCCTAAGAAATTGGGGGAATTCATCTGCAACAAAGCTAGAGCACTTGAGCTGAGAGCATTGGTAAAAGGTGGGTGTGGCTGTAATCATTTTATATTCGAAGGACCCCCAAATGTAGGAAAGAGATCCATGATACGGGCTATGCTTCGAGAGGTATTTGGCGATGATGGAGTGCAGGTCACAGAAGAATACAAAGACTTCAGCTTGAAGGGAGAAATGGTCGAAAGTCTCCAGCTGCGCGTGCAGAAATCATTCCATCATGTTGAGGTAAATCTCTCGGAAGCAAAGGGATATGAAAAACATGTGATTGTTGAGCTATTCAAGGAAACATATGGTAAGGTGATAAATAGCTCATTGCCTTGTAGTCCAGAAAACTGTCAAGCAATCATTTTGTACGAGGCGGAGAAGCTATCGTTAGAATCGGTGTTGTATATAAAGTGGATGGTAGAAAAGTATAAAGGGTGTAATAAGCTGTTCTTTTGTTGCTCTGATGAATCAAGGCTACAGCCAATCCAATCGCATTGCACCACTGTCCGTCTCTCTTCACCATCAACCCAACAGATTGTCAAGATTTTGGAATATATTGTACAAGAAGAAGGAATAAAGTTATCGCGCGAGTCAATCAAGAAGATAGTTTTGAGGTCCAAAAACAATCTCCGTCAAGCCATTCGTTCATTGGAGGCCACTTACCGACACAAGAATGCCCTCAACGACGATGATTTGATTTTAACTGGATGGGAGTACGATATATTGAATATTGCTAAAAATGTAGTCAGCGAGCAGAGTCCAAGACAGTTGTATGCCATTCGAAGAAAGCTTCAAAGTCTTATGATTCATGACGTTCCTCCTGACTTTATTTACAAGACTTTGGTTGCACACTTAACAAGTCTAGTCGATGATTCACTGTGCTCAGAGTTTGCCAAACTTCACAAGGAGTACACCAAAGTTAGTGAAATGAAATTTGAAAACAAACAAGGAGGGTCTGATGAAAAGAACAGTGAGCTAACAAAAAAGAATGCAATGAACTACTTAAAAGTTGAAGAATTCATAGCAAAATTCATGAGCTGGTACAGGAATTCGTCTAAAAGTAATGATCATATGCAACTTGTTGCTGGAGTTTAA 2400 0.4179 MKIPSPTRKQSVGDRHMISPTRHNMSRSARRRKNTGHWWLSSISWRMKKDIDSYDLTPQTNLSSNSPYYKGLTDQSLAITPTPHEEDYDPDNTASPSLRPLLLSSSPISSPYYKGLTDYSLVVDASWTATPHSIPHHSSSLSCHHDSSPYYRGLIALPISASPSSLYSLNINFNPSTTTSAQSSTRDFVVFLSPEDQSLMVTEPEATLEEGIVLIHPGIQGKPLRVNDQLSSQATLEEMDDDDDDDDDNNNIECEKPLRVNIESETILEKTILENAVLLVEENTRKPLRVNIESETILEKTILEDAVLLVEENTRKPLREKVTSDSETVLLQQENDDITDLGIEELELVFEQEKTLRESDVSQGRNEKALINTEKTDLKEELGDFWLGGQKTVSEQTVALEVPCEHMLKHTAEEGNLYEYLWATKYQPKKLGEFICNKARALELRALVKGGCGCNHFIFEGPPNVGKRSMIRAMLREVFGDDGVQVTEEYKDFSLKGEMVESLQLRVQKSFHHVEVNLSEAKGYEKHVIVELFKETYGKVINSSLPCSPENCQAIILYEAEKLSLESVLYIKWMVEKYKGCNKLFFCCSDESRLQPIQSHCTTVRLSSPSTQQIVKILEYIVQEEGIKLSRESIKKIVLRSKNNLRQAIRSLEATYRHKNALNDDDLILTGWEYDILNIAKNVVSEQSPRQLYAIRRKLQSLMIHDVPPDFIYKTLVAHLTSLVDDSLCSEFAKLHKEYTKVSEMKFENKQGGSDEKNSELTKKNAMNYLKVEEFIAKFMSWYRNSSKSNDHMQLVAGV 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun6353g00004 799 Coils Coil 642 662 - -
Vifaun6353g00004 799 FunFam replication factor C subunit 3 610 668 - -
Vifaun6353g00004 799 MobiDBLite consensus disorder prediction 1 31 - -
Vifaun6353g00004 799 Gene3D - 610 670 - -
Vifaun6353g00004 799 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 422 741 - -
Vifaun6353g00004 799 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 422 657 IPR027417 -
Vifaun6353g00004 799 SUPERFAMILY post-AAA+ oligomerization domain-like 671 736 IPR008921 GO:0003677|GO:0006260
Vifaun6353g00004 799 CDD HLD_clamp_RFC 609 667 - -
Vifaun6353g00004 799 Gene3D - 671 783 - -
Vifaun6353g00004 799 Gene3D - 420 609 IPR027417 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun6353g00004 421 785 Core DNA Replication Machinery Family AT5G27740 29.539 2.49e-45 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun6353g00004 K10756 - gmx:102664389 630.172