Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun6353g00002 ATGGAAGCAGTTAATGGAAAAGCGGTGCCGTTTGGCATCGGATGGAATCTTAGACTCAGAACCAAACCCACACACTCTTTCTTGTTCATTTCAAACTCCTCCACCACCGATTCCAAACCACAATCGCGTTTCGAGAAACCAAATGCTAACAAAAACAAGCAGAACGCTCTTATCCTTAGATCAAAGGAAAAGATAAGAAGACGCAAACAAGCAGAACTAGATGAAAATCCAACACCAACACGACGTCGTTCAAGTCCTCATTCCAAAGGTTGGGGAGATACTAGGGTTACGACGTCGTTTAAATTCTCATTGCCGTTGGAGGATACCAATTTTTTCAGTCTCAAGTCCTTTAAAGACATTGGTTGCGCTGATTTCGTCCTTCACTCTCTCCATAACCTCTCTTTAACTCGTCCTTCACATATTCAAGCCATATCATTTGCTCCGATTATTGCCGGAAAATCGTGTATCGTAGCTGATCAGAGTGGTTCGGGTAAGACATTGGCTTATCTTGTACCGATTATTCAGCGGCTCAGGCAACAAGAACTAGATGGACGTCATAAATCATCTTCACAGGCTCCAACAGTTCTTATACTCGCGCCCACGGCCGAGTTGGCTTATCAGGTCTTACATAATTGTCGATCAATGTCAAAATCCGGCGTTCCGTTTAAATCTATGCTTGTCACTGGAGGCTTTGCACAAAAAACTCAACTCGAGAGTTTAAAGCAGGGCGTTGATGTATTAGTCGCTACGCCAGGTCGTTTTTTGTTCCTCATGACGGAAGGTTTCTTGCAGTTAACAAATTTAACATGTGCTGTGTTGGATGAGGTAGATATACTCTTTGGGGATGAGGACTTTGAAAAGGCTCTTCAATGCTTGATTAGTTCTTCACCAGTTGACTCACAATATTTATTTGTGACTGCAACTTTACCAAAAAATGTTTACAGCAAACTGGTTGAAGTTTTTCCTGATTGTGAAATGGTCATGGGACCTAGTATGCATCGAATAAGCTCTCGCCTTGAAGAGATAATAATAGATTGCAGTGGGGAAGGTGTACAAGAAAAAACACTGGACACAGCATTTTTGAACAAGAAAGCTGCTCTTCTGAAGCTTGTGGAGGAGAACCGTGTCCCAAGAACTATTGTGTTCTGTAACAAAATTGAAACATGCAGAAAAGTTGAAAATGCGTTAAACCGTTTTGATAGGAAGGGAACTCGCATGCAAGTTCTACCTTTCCATGCTGCCATGACACAAGAATCACGGCTTGCTAGTATGAAAGAGTTTACACGTTCTCCATCAAAAGAGGTGTCCCAATTTATGGTTTGCACAGACAGAGCATCACGGGGAATCGACTTCGCTGGAGTAGATCATGTAATACTTTTTGACTACCCCCGTGATCCAAGCGAATATGTACGGCGTGTTGGAAGAACAGCACGAGGTGCCAGGGGACAGGGCAAGGCATTTATCTTTGTAGTTGGCAAGCAAGTATCCCTTGCACGCAAAATATCGGAAAGAAATCGGAAGGGTCATCCACTGCATGATGTACCTTCGGCTTATGAGAGTTGA 1563 0.4299 MEAVNGKAVPFGIGWNLRLRTKPTHSFLFISNSSTTDSKPQSRFEKPNANKNKQNALILRSKEKIRRRKQAELDENPTPTRRRSSPHSKGWGDTRVTTSFKFSLPLEDTNFFSLKSFKDIGCADFVLHSLHNLSLTRPSHIQAISFAPIIAGKSCIVADQSGSGKTLAYLVPIIQRLRQQELDGRHKSSSQAPTVLILAPTAELAYQVLHNCRSMSKSGVPFKSMLVTGGFAQKTQLESLKQGVDVLVATPGRFLFLMTEGFLQLTNLTCAVLDEVDILFGDEDFEKALQCLISSSPVDSQYLFVTATLPKNVYSKLVEVFPDCEMVMGPSMHRISSRLEEIIIDCSGEGVQEKTLDTAFLNKKAALLKLVEENRVPRTIVFCNKIETCRKVENALNRFDRKGTRMQVLPFHAAMTQESRLASMKEFTRSPSKEVSQFMVCTDRASRGIDFAGVDHVILFDYPRDPSEYVRRVGRTARGARGQGKAFIFVVGKQVSLARKISERNRKGHPLHDVPSAYES 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun6353g00002 520 CDD SF2_C_DEAD 339 490 - -
Vifaun6353g00002 520 Pfam DEAD/DEAH box helicase 140 313 IPR011545 GO:0003676|GO:0005524
Vifaun6353g00002 520 CDD DEADc 126 313 - -
Vifaun6353g00002 520 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 33 518 - -
Vifaun6353g00002 520 SMART helicmild6 390 480 IPR001650 -
Vifaun6353g00002 520 MobiDBLite consensus disorder prediction 66 92 - -
Vifaun6353g00002 520 SMART ultradead3 134 342 IPR014001 -
Vifaun6353g00002 520 Gene3D - 349 516 IPR027417 -
Vifaun6353g00002 520 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 491 IPR027417 -
Vifaun6353g00002 520 Pfam Helicase conserved C-terminal domain 363 479 IPR001650 -
Vifaun6353g00002 520 MobiDBLite consensus disorder prediction 66 89 - -
Vifaun6353g00002 520 Gene3D - 96 327 IPR027417 -
Vifaun6353g00002 520 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 362 520 IPR001650 -
Vifaun6353g00002 520 MobiDBLite consensus disorder prediction 31 54 - -
Vifaun6353g00002 520 MobiDBLite consensus disorder prediction 501 520 - -
Vifaun6353g00002 520 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 146 327 IPR014001 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun6353g00002 114 503 Eukaryotic Initiation Factors Gene Family AT3G19760 26.154 1.71e-29 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun6353g00002 K13179 - gmx:100780849 670.233