Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun634g00001 ATGAGCCGCTACGACAGCCGTTCCTCCGACCCCACTTCCTACCGCGACCGAAGAACTGACTCTGGCTTAGGTGGTGGTGGAGGAGGTTCTGCTGCTGCGCCTTCGAGTAGAAGAGATGGGTCAGGTTCTCCTAAGAAGATTAATTTGGATGGGTTGCCTCATTTTGAGAAAAACTTCTACAATGAATCGCCTTCTGTCAGGGCAATGACTGAGGCTGAAGTTACTGAGTATCGGCTACGCCGCGAAATTACTGTTGAAGGCAAAGATGTTCCTAAACCTGTTAAATCCTTTTCTGATGCTGCTTTTCCAGAATATGTACTGGAAGAAGTTAAAAAAGCTGGCTTTGTTGAACCTACACCTATTCAGTCTCAAGGTTGGCCAATGGCTTTGAAGGGACGTGATCTAATAGGAATTGCAGAGACAGGATCAGGGAAGACACTTGCTTATTTGTTGCCTGCCATAGTGCATGTTAATGCTCAGCCAATTCTAGATCCTGGGGATGGTCCTATTGTGTTAGTTTTGGCCCCAACACGTGAACTTGCCGTCCAAATTCAACAAGAGGCTACTAAATTTGGTGCATCGTCAAGGATTAAGAGCACATGCATATATGGTGGGGTTCCTAAAGGGCCTCAAGTACGCGATCTTCAGAAAGGTGTTGAAATTGTAATCGCCACTCCGGGAAGGTTAATTGATATGCTCGAGTCAAATCATACTAACTTGCGAAGGGTCACATACTTGGTATTAGATGAAGCTGATAGGATGTTGGACATGGGGTTTGATCCTCAAATACGGAAAATTGTCTCTCAGATTCGTCCAGACCGTCAGACTTTGTACTGGAGTGCTACATGGCCAAAGGAGGTCGAACAATTGGCAAGGCAGTTCCTTTACAATCCATACAAAGTAATTATAGGTTCTGAAGTTTTAAAAGCCAACCATGCTATAAAGCAATACGTTGACATTGTTCCTGAAAAGCAAAAATATGATAAATTGGTGAAGTTGTTGGAGGACATCATGGATGGAAGCAGAATATTGATATTCATGGATACTAAAAAAGGGTGTGATCAGATTACTAGGCAGCTCCGCATGGATGGGTGGCCTGCACTTTCAATTCATGGAGACAAAAGTCAAGCAGAAAGAGATTGGGTGCTTTCAGAGTTTAAATCTGGAAAGAGTCCTATAATGACTGCAACAGATGTTGCAGCTCGTGGTTTAGATGTGAAGGATGTGAAGTACGTGATAAATTATGACTTCCCGGGATCACTAGAGGATTATGTTCACCGCATTGGAAGGACTGGGAGAGCTGGTGCAAAAGGAACTGCATACACATTCTTCACAGCAGCTAATGCCAGATTTGCAAAGGAACTTATTAGCATACTTGAAGAAGCTGGACAGAGAGTAAGTTCTGAATTGGCAGCAATGGGGCGGGGTGCACCTCCTCCACCTTCAGGGGGCTTCCGAGACCGTGGGAAGAGTTTTGGCAGCGGTCGCCCATGGAGCTGA 1500 0.45 MSRYDSRSSDPTSYRDRRTDSGLGGGGGGSAAAPSSRRDGSGSPKKINLDGLPHFEKNFYNESPSVRAMTEAEVTEYRLRREITVEGKDVPKPVKSFSDAAFPEYVLEEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDPGDGPIVLVLAPTRELAVQIQQEATKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESNHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARQFLYNPYKVIIGSEVLKANHAIKQYVDIVPEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELISILEEAGQRVSSELAAMGRGAPPPPSGGFRDRGKSFGSGRPWS 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun634g00001 499 Gene3D - 305 475 IPR027417 -
Vifaun634g00001 499 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 126 301 IPR014001 -
Vifaun634g00001 499 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 329 474 IPR001650 -
Vifaun634g00001 499 MobiDBLite consensus disorder prediction 1 17 - -
Vifaun634g00001 499 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 131 178 IPR027417 -
Vifaun634g00001 499 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 95 123 IPR014014 GO:0003724
Vifaun634g00001 499 MobiDBLite consensus disorder prediction 471 499 - -
Vifaun634g00001 499 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 247 255 IPR000629 -
Vifaun634g00001 499 FunFam ATP-dependent RNA helicase RhlB 305 477 - -
Vifaun634g00001 499 Pfam DEAD/DEAH box helicase 119 290 IPR011545 GO:0003676|GO:0005524
Vifaun634g00001 499 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 68 473 - -
Vifaun634g00001 499 CDD SF2_C_DEAD 314 444 - -
Vifaun634g00001 499 Gene3D - 58 304 IPR027417 -
Vifaun634g00001 499 FunFam probable ATP-dependent RNA helicase DDX17 57 304 - -
Vifaun634g00001 499 Pfam Helicase conserved C-terminal domain 326 435 IPR001650 -
Vifaun634g00001 499 CDD DEADc_DDX5_DDX17 106 301 - -
Vifaun634g00001 499 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 167 451 IPR027417 -
Vifaun634g00001 499 MobiDBLite consensus disorder prediction 1 50 - -
Vifaun634g00001 499 SMART helicmild6 354 435 IPR001650 -
Vifaun634g00001 499 SMART ultradead3 114 317 IPR014001 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun634g00001 82 473 Eukaryotic Initiation Factors Gene Family AT3G19760 34.606 3.33e-77 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun634g00001 K12823 - gmx:100790464 874.004