Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun6348g00001 ATGCCAAGTGTGGCTGTAAAACTCTACAGTGTATTCTTCAAGTTCCTCTTGAAGCACCGTTTACAAAACTGGATTCAAGCCCAACCCGACAATAACTCCAACTCGTTTGGTATCACTTCACGACCCGAAGAATCCGTCGCTAACTCTAACCCTTCTTTTACCGACGGCGTCGCCACCAAGGATATCCACATCGATCCTTTCACTTCTCTCTCTATCCGAATCTTTCTTCCTCACTCCGCTCTTTCTCCTCCCGGGCCTTATTCCAAACCTAACTCCAAACCTAAACAACAAGCTCCCGAACCTGGATCTGTACGGAGAAGTAGCTATGGTCCTCCGTTCAGGGAAGAGCAGCTCCGAGGAAGGAATAGTAACGCTGTTGAGGGTTTGAATTTGATGGGCGCTGGTGTTGAAACTGGTGCCGATTTGTACCGTGGTTACTCGCCGATGTTGGATAATCGGCGGAGGAAATTACCGGTGATGTTGCAGTTGGCGCCGGAGAGTAGGTATCTGGCTGCGTTTGAGGATGGGTTGAAGGTGTTGAATTGGTTGGCCAAGCAGGCGAATTTGGCCGAGTGTAGTAAATCTATGGGGGTTGGTGGAGGAAGCCATGGTGGTGGTGGTGGTGGGGAGTTTAAAAAGGATAATCATAGGCATATTGTTGATTCTTTTGGTGCTTCAGTGGTGGAGCCTTGGTTGGCTAGTCATGGAGATCCAACAAGGTGCAAGCCATACATAGCTATGATTTGTCTTCAATTTGGTTTTGCTGCTATTGCTCCATTCGCTATAGTTCTTGAGAGGAAGATAAGGCCAAGGATTACGTTTCTTATGTTCATGCAAATGTTTGTATTGGGACTCCTCGGGCCTGTGATTGATCAGAATCTATACTGTGCTGGGTTGAAATTCACATCTCCAACATACTCTTGTGCTATTAGCAATATTCTCCCTGCAATGACTTTTGTAATGGCTGTTACTTTCAGGATGGAGAAATTGGACATAAAAAAATTAAGATGCCAAGCAAAAGTGATTGGAACTGTAATCACAGTTGGTGGGGCTATGGTGATGACATTATACAAAGGACAAGTTATGAATATATTGGGTTCTCAATACATGCATCATCCTAGAAACTATGTACCTGAAAACAATAGTGATTCTGGTGAAAAGGATTGGGTTAAAGGTTCAATCCTTCTCATAATTGCTACCTTTGCTTGGTCTTCTTTCTTCATCCTCCAGGCAGTGACATTAAGACAATATTCAGCACAACTTTCACTGACAGCCATAGTATGTTTCTTGGGAACACTTCAATCAATAGCAGTTACATTTGTTATGGAGCATAAACCAAATGTTTGGAACATTGGTTTGGACATGAATTTATTAGCTGCAGCCCATGCTAAAGGACCAGTTTTTGTGACTGCTTTTAGTCCTTTGATGATGATCATTGTAGCAATCATGGCCACTTTCATCCTTGCTGAAAAATTATATCTTGGAGGTGTTATTGGAGAAATTTTGATCGTAATAGGACTTTACTCCGTTCTATGGGGCAAAAACAAAGAAAACAAAGAGATTGAAGCGGAAACAAAAACAGAAAGAACGAAGTGTTGTGTAAAAATTTGGAGGCTGGTTATGTTAAGGGTAATTGGGTCTTCTTTTAGGATGAGTGTATATATCAGTATACTGATTATTTAG 1683 0.4231 MPSVAVKLYSVFFKFLLKHRLQNWIQAQPDNNSNSFGITSRPEESVANSNPSFTDGVATKDIHIDPFTSLSIRIFLPHSALSPPGPYSKPNSKPKQQAPEPGSVRRSSYGPPFREEQLRGRNSNAVEGLNLMGAGVETGADLYRGYSPMLDNRRRKLPVMLQLAPESRYLAAFEDGLKVLNWLAKQANLAECSKSMGVGGGSHGGGGGGEFKKDNHRHIVDSFGASVVEPWLASHGDPTRCKPYIAMICLQFGFAAIAPFAIVLERKIRPRITFLMFMQMFVLGLLGPVIDQNLYCAGLKFTSPTYSCAISNILPAMTFVMAVTFRMEKLDIKKLRCQAKVIGTVITVGGAMVMTLYKGQVMNILGSQYMHHPRNYVPENNSDSGEKDWVKGSILLIIATFAWSSFFILQAVTLRQYSAQLSLTAIVCFLGTLQSIAVTFVMEHKPNVWNIGLDMNLLAAAHAKGPVFVTAFSPLMMIIVAIMATFILAEKLYLGGVIGEILIVIGLYSVLWGKNKENKEIEAETKTERTKCCVKIWRLVMLRVIGSSFRMSVYISILII 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun6348g00001 560 SUPERFAMILY Multidrug resistance efflux transporter EmrE 252 357 - -
Vifaun6348g00001 560 MobiDBLite consensus disorder prediction 28 52 - -
Vifaun6348g00001 560 Pfam EamA-like transporter family 245 355 IPR000620 GO:0016020
Vifaun6348g00001 560 MobiDBLite consensus disorder prediction 83 124 - -
Vifaun6348g00001 560 SUPERFAMILY Multidrug resistance efflux transporter EmrE 455 516 - -
Vifaun6348g00001 560 Pfam alpha/beta hydrolase fold 161 205 IPR013094 GO:0016787
Vifaun6348g00001 560 PANTHER WAT1-RELATED PROTEIN 252 523 IPR030184 GO:0016020|GO:0022857
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun6348g00001 239 519 Nodulin-like Gene Family AT5G07050 54.819 6.19e-119 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun6348g00001 - - gmx:100793545 467.618