Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun6337g00001 ATGTCAACTGGAAGGAAAAGTCGTGGTCGTCAAAAGATTGAGATGAAAAAGATGAGCAATGAGAGCAACTTGCAAGTGACTTTCTCAAAACGTCGTAGTGGACTCTTTAAGAAAGCCAGTGAACTTTGTACACTTTGTGGTGCAGATGTTGCTCTTGTTGTATTTTCACCTGGAGAGAAGGTGTTTTCCTTTGGTCACCCACATGTTGATACGGTCATAGATCGTTATCTATCACGGATCCCACCCCAAAACAATGGCACAGTGCAATTCATTGAGGCTCACCGTAGCGCCAATGTGCGAGATCTCAATAACCAACTGACTCAAATCAACAATCAGTTGGACATTGAGAAGAAGCGTGGTGATGAGCTGAGCCATTTGCGCAAGGCCACTGAGACTCAATTTTGGTGGGCTTGTCCTATTGATGGGATGAATAGGGCTCAACTTGAATTATTCAAGAAGGCTTTGGAAGAACTTAAGAAACTTGTTGCACAACATGCTGATAGGCTTGTAATTCAAGGTGCACCTACCCAAACTATTCCATTTTTTGTTGGAAATGGTTCCAACGCTAACATGGCAATCCATCACCAAGCAAATCCTCAACAAGCTCATATGTTTCAACAACAATTTTTTCAGAACCCTATGATGCAACCTCATTTGTTTGGTTTCAACAATATGGGTGGAAGTGGCGGATATGGACCCTCTGGATTCTTTTGA 714 0.4244 MSTGRKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGADVALVVFSPGEKVFSFGHPHVDTVIDRYLSRIPPQNNGTVQFIEAHRSANVRDLNNQLTQINNQLDIEKKRGDELSHLRKATETQFWWACPIDGMNRAQLELFKKALEELKKLVAQHADRLVIQGAPTQTIPFFVGNGSNANMAIHHQANPQQAHMFQQQFFQNPMMQPHLFGFNNMGGSGGYGPSGFF 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun6337g00001 237 Coils Coil 99 119 - -
Vifaun6337g00001 237 PANTHER MADS BOX PROTEIN 10 165 - -
Vifaun6337g00001 237 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Vifaun6337g00001 237 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Vifaun6337g00001 237 SUPERFAMILY SRF-like 9 82 IPR036879 GO:0003677|GO:0046983
Vifaun6337g00001 237 Gene3D - 88 174 - -
Vifaun6337g00001 237 Gene3D - 20 87 IPR036879 GO:0003677|GO:0046983
Vifaun6337g00001 237 Coils Coil 148 168 - -
Vifaun6337g00001 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Vifaun6337g00001 237 FunFam Agamous-like MADS-box protein AGL62 20 86 - -
Vifaun6337g00001 237 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Vifaun6337g00001 237 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Vifaun6337g00001 237 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Vifaun6337g00001 237 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun6337g00001 5 188 Type I MADS-box Gene Family AT5G60440 57.219 2.08e-67 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vifaun6337g00001 SRF-TF 1.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun6337g00001 - - tpra:123904441 299.671