Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun6291g00002 ATGGATCCCTATCAACAAGCCGGTCAACCTTGTTCTTCAACAAAAGTGGAAAGAAAGATTGTTGAGAAAAATAGGAGAAATAAGATGAAGAGTCTCTATTCCAAACTCAACTCTCTTCTTCCTAACTATAATCCCAAGAAAGCTTTACCATTACCTGATCAAGTAGACAATGCTATAAACTACATAAAGAGCTTAGAGACAGATTTGAAATTGGCAAGGGAGAAGAAAGAAAGTTTAATGAGAAGCAAGAGATTGCGTAGTGGCTGTTCGAGTTCTTCTGGAGCAAAAGGAAGCATAAAATCACCAAAAATAGAGATTCATGAAAATGGTTCTTCTCTACAAGTTATTGTAACTTGTGGGGTTGATGAACAGTTTATTTTCTGTGAAATTATGAGAATGTTGCATGAAGATCGCGTGGAGGTCATCTCTGCAAATTCTTCACTGGTTGGAGATTCAGTTATTCATGTTGTGCATGCTGAGAATCCGCAATTATTGTTTCAATATGGAGCGACCAAAGTGGGTGAGAGATTGAAAAGGTTTGTGAATGGATCTGTGAGAGAGGTGCAAATAGAGCCTCAATTATGGGATTCTGAGATTGAAACTGAGACTTGGGATCTAAGTTCTATAGTAAACAAGTGTTTACCAAATTCTTTATGA 657 0.3714 MDPYQQAGQPCSSTKVERKIVEKNRRNKMKSLYSKLNSLLPNYNPKKALPLPDQVDNAINYIKSLETDLKLAREKKESLMRSKRLRSGCSSSSGAKGSIKSPKIEIHENGSSLQVIVTCGVDEQFIFCEIMRMLHEDRVEVISANSSLVGDSVIHVVHAENPQLLFQYGATKVGERLKRFVNGSVREVQIEPQLWDSEIETETWDLSSIVNKCLPNSL 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun6291g00002 218 Pfam Helix-loop-helix DNA-binding domain 15 66 IPR011598 GO:0046983
Vifaun6291g00002 218 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 12 181 - -
Vifaun6291g00002 218 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 13 85 IPR036638 GO:0046983
Vifaun6291g00002 218 Gene3D - 10 92 IPR036638 GO:0046983
Vifaun6291g00002 218 MobiDBLite consensus disorder prediction 82 103 - -
Vifaun6291g00002 218 Coils Coil 55 82 - -
Vifaun6291g00002 218 SMART finulus 19 71 IPR011598 GO:0046983
Vifaun6291g00002 218 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 13 65 IPR011598 GO:0046983
Vifaun6291g00002 218 MobiDBLite consensus disorder prediction 84 98 - -
Vifaun6291g00002 218 FunFam Transcription factor bHLH162 6 91 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun6291g00002 1 183 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 40.933 8.65e-36 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifaun6291g00002 HLH 2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun6291g00002 - - mtr:25487667 272.322