Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun6174g00001 ATGGTTGTTGAATCAAACAGGAGCCGTTTTAGCTATGTCGTTCTTCTTTGCCTATTCTTTTGTTGTTATACTTGTTCACAGAAGACTTGTCCAAACTGTGGTTCCATGAATGTTCCGTATCCTTTGAGTATAGAATCGAACTGTGGTGATCCGGACTATAGACTTCGTTGTGATCCTCATTCTCAGAAGCTTTACTTTGACACTCTCAATGGAGGTTCCTATGTTGTACTCAGAATCGTGTCTTCGATTCAGCGCATGGTGGTGCAGGCGCCACCTTGGTTACCTGGTTCATGTGTCACACAAGACATGCTGGTAAGTAATGGTATTTGGTTAAATCAGTCACTTCCTTTCAACATAACTTCATCGAACACGGTGTTCCTCTTCAACTGTTCCCCTCGCCTCTTGGTTTCTCCTCTTAACTGTACTGCTTCAAGTATATGTCATCGTTACTTGGAAAATTCAGGTCATGTTGACAAGAAGAGAGCACGAGGGTGTGCGAGTGGTCTTCGCCCCTGTTGCACCTTTGTTGCTGGTGGCATGCCTTCGGCTTACAAGATTCGCCTTCACAGTTCCGGTTGCAAAGCGTTCAGAAGCATCCTTCATTTGGACCAAGACAAAGCTACTAATCTGTGGGAGGAAGGTCTAGAGATTCAATGGTCTCTTCCACCCGAACCTGTATGCAGGACACAAACCGATTGTTCTCGACACTCTAAGTGTTCATCTTCGGGTAGAGACAAACTCTTCCGCTGTCTTTGTAATAGAGGATTCCATTGGAACCCTTCTACAACAACCTGTGAAAAATACCAGAGAAAATCCAAATGGAAAACCACCTTGATTGTCTCAATAGCGGTTATTTCTTTTTTCTCACTCGCCGTGGTTCTTGTTATAATCACAAAGTCCTTCAAACACTCGAAGCTCGCCAAGGAAAGAGAAACTGCGATGAAATCAAGCATTGGAGTGGAGAAGCCTTACAAAATGTTTCAACTGAAAGAATTGAAGAAAGCAACGAAATGTTTTTCGCACGACAGGATCTTAGGAAGTGGCGGCTTCGGGGAAGTTTACAAAGGCGAACTAAAAGACGGAACACTAGTAGCTGTCAAGAAAGCTAGAGTTGGCAACCTTAAAAGCACACAACAAGTGCTTAACGAAGTTTCAATACTTTCTCAAGTCAATCACAAGAACCTAGTCAGACTCTTAGGCTGCTGTGTGGAATCTGAGCAACCTTTAATGATCTATGAGTATATCTCGAATGGAACCCTCTACGATCATATTCAAGGTAGGTATCCGAGTTTTCTCGACTGGAAAAAAAGACTGAAGATTGCTTTTCAAACCGCAGAAGCATTGGCTTATTTGCATTCTTCTGCACACACCCCCATCTACCATAGAGATGTTAAGTCAACAAATATACTATTAGACGATGAATTCGATGCCAAAGTTTCAGATTTCGGACTCTCCAGATTGGCTAACCCGGGACTTAGTCATGTATCCACCTGTGCTCAGGGAACGCTAGGGTACTTGGATCCTGAATACTATCGCAACTACCAGTTAACCGATAAAAGTGATGTTTATAGCTATGGAGTTGTTCTGCTAGAGCTTCTGACTTCAAAGAAAGCGATAGACTTTTCTCGCGATCAAGATGACGTTAACCTCGTAATTCATGTGAGTCAATATGCAAGCAATGGTGCAATCATGCAAGTGGTTGATCAAAGGCTTGTTCTATCTGTGGAACCCTTAAGTGGTAAATTGATCACAAGCATCAAACTCTTTTGGGAACTTGCACATGATTGTCTTAGAGAGAAGAGAGTTGAAAGGCCTTGCATGAGGGATATTGTTGAAAGACTCTTATACATAGTTAGGATTGAAGATCAAGAGTGA 1875 0.4251 MVVESNRSRFSYVVLLCLFFCCYTCSQKTCPNCGSMNVPYPLSIESNCGDPDYRLRCDPHSQKLYFDTLNGGSYVVLRIVSSIQRMVVQAPPWLPGSCVTQDMLVSNGIWLNQSLPFNITSSNTVFLFNCSPRLLVSPLNCTASSICHRYLENSGHVDKKRARGCASGLRPCCTFVAGGMPSAYKIRLHSSGCKAFRSILHLDQDKATNLWEEGLEIQWSLPPEPVCRTQTDCSRHSKCSSSGRDKLFRCLCNRGFHWNPSTTTCEKYQRKSKWKTTLIVSIAVISFFSLAVVLVIITKSFKHSKLAKERETAMKSSIGVEKPYKMFQLKELKKATKCFSHDRILGSGGFGEVYKGELKDGTLVAVKKARVGNLKSTQQVLNEVSILSQVNHKNLVRLLGCCVESEQPLMIYEYISNGTLYDHIQGRYPSFLDWKKRLKIAFQTAEALAYLHSSAHTPIYHRDVKSTNILLDDEFDAKVSDFGLSRLANPGLSHVSTCAQGTLGYLDPEYYRNYQLTDKSDVYSYGVVLLELLTSKKAIDFSRDQDDVNLVIHVSQYASNGAIMQVVDQRLVLSVEPLSGKLITSIKLFWELAHDCLREKRVERPCMRDIVERLLYIVRIEDQE 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun6174g00001 624 SUPERFAMILY Protein kinase-like (PK-like) 318 615 IPR011009 -
Vifaun6174g00001 624 Pfam Protein kinase domain 340 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifaun6174g00001 624 FunFam Wall-associated receptor kinase-like 20 415 624 - -
Vifaun6174g00001 624 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 311 414 - -
Vifaun6174g00001 624 Gene3D Transferase(Phosphotransferase) domain 1 415 624 - -
Vifaun6174g00001 624 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 14 617 IPR044652 GO:0004672
Vifaun6174g00001 624 SMART serkin_6 339 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifaun6174g00001 624 ProSitePatterns EGF-like domain signature 2. 250 265 IPR000742 -
Vifaun6174g00001 624 Pfam Wall-associated receptor kinase galacturonan-binding 30 88 IPR025287 GO:0030247
Vifaun6174g00001 624 Gene3D Phosphorylase Kinase; domain 1 297 414 - -
Vifaun6174g00001 624 ProSiteProfiles Protein kinase domain profile. 339 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifaun6174g00001 624 ProSitePatterns Serine/Threonine protein kinases active-site signature. 459 471 IPR008271 GO:0004672|GO:0006468
Vifaun6174g00001 624 CDD STKc_IRAK 345 614 - -
Vifaun6174g00001 624 ProSitePatterns Protein kinases ATP-binding region signature. 345 368 IPR017441 GO:0005524
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun6174g00001 3 624 Receptor kinase-like Gene Family AT5G02070 43.647 3.55e-179 521
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vifaun6174g00001 Pkinase 6.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun6174g00001 - - gmx:100804678 986.097