Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun6055g00001 ATGGCAAGTAAAATTGCCATTACTTTTTTGGTTTTTGCTATTGCTATTCCATGCTTTGAAGCTGGTATTGCTGAGTTTGATGATTATCTTAAAGCACAAGCTAATTTAGCTCGTGAAATTGCTCTTAAGTCTTATATTCCGAATCCAGAAAATATTACAACTGAGATCAATCATCATGTCCATATGGCAATGCAAGAGGCAATGGCGGAGGAGGAATATTCAAATAACACAAGGAGGGAACTAAGACAAGGACATAGAGGTCGGCGTGGTAAACAACTACCTTGCATGGCCTCTAATCCAATCGACCGTTGTTGGAGGTGTAACAAGGATTGGGCTAAAGATCGTCAAAGGTTAGCCAAATGTGGTAAAGGTTTTGGTAGAAAGGCGGTAGGAGGACTTGGTGGAAAGTACTATATTGTCACAGATCCTTCCGACAATGATATGGTTAACCCAAAACCTGGCACTCTCCGTCACGGTGCTGTTCAAAAGGGACCACTTTGGATTATTTTCGCACATAGCATGGTCATTAGATTGAATCAAGAGTTGATGGTTTCATCCGACAAGACAATTGATGGTCGTGGTGCCCAAGTTCACATTAGGGATGGTGCTGGAATTACAATGCAATTTGTGAACAATGTCATTATTCATGGTCTTCGCTTAAAGAACATTAAGGCTAAGAATGGTGGTATGATTAGAGACGCTTTTGATCATGTTGGACTAAGAACAAGGAGTGATGGCTCTACCGCAATTACCATCTCAAATTGCCATATGACCAAACATAATGATGTTATGTTGTTCGGAGCTAGTGATAAATACACCGATGACAAGATTATGCAAATCACAGTTGCATTCAACCATTTCGGACAAGGATTGATTCAAAGAATGCCAAGGTGTAGATGGGGATTCTTCCATGTTTTGAACAATGATTACACACATTGGATCATGTATGCAATTGGTGGAAGTTCAGAACCAACAATTCTCAGTCAAGGAAACCGTTTCATCGCTCCTAACAACAATGCTGCAAAGACAGTCACACATAGAGATTATGCAACAGAAAGTGTTTGGTCGAAATGGCAATGGAGATCAGAAGGTGATTTCTTCATGAATGGTGCAACATTTATTCAATCTGGTGCTCCTATTAAGAATCTTCCATTCAAGAAAGGGTATCTGATGAAACCAAGACATGGATCACCAGGCTAA 1200 0.4017 MASKIAITFLVFAIAIPCFEAGIAEFDDYLKAQANLAREIALKSYIPNPENITTEINHHVHMAMQEAMAEEEYSNNTRRELRQGHRGRRGKQLPCMASNPIDRCWRCNKDWAKDRQRLAKCGKGFGRKAVGGLGGKYYIVTDPSDNDMVNPKPGTLRHGAVQKGPLWIIFAHSMVIRLNQELMVSSDKTIDGRGAQVHIRDGAGITMQFVNNVIIHGLRLKNIKAKNGGMIRDAFDHVGLRTRSDGSTAITISNCHMTKHNDVMLFGASDKYTDDKIMQITVAFNHFGQGLIQRMPRCRWGFFHVLNNDYTHWIMYAIGGSSEPTILSQGNRFIAPNNNAAKTVTHRDYATESVWSKWQWRSEGDFFMNGATFIQSGAPIKNLPFKKGYLMKPRHGSPG 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun6055g00001 399 Pfam Pectate lyase 245 333 IPR002022 -
Vifaun6055g00001 399 SUPERFAMILY Pectin lyase-like 99 383 IPR011050 -
Vifaun6055g00001 399 PANTHER PECTATE LYASE 18-RELATED 37 246 IPR045032 GO:0030570
Vifaun6055g00001 399 Pfam Pectate lyase, N terminus 23 81 IPR007524 GO:0030570
Vifaun6055g00001 399 Gene3D - 113 397 IPR012334 -
Vifaun6055g00001 399 PRINTS Pollen allergen Amb family signature 121 138 IPR018082 -
Vifaun6055g00001 399 PRINTS Pollen allergen Amb family signature 145 170 IPR018082 -
Vifaun6055g00001 399 PRINTS Pollen allergen Amb family signature 181 197 IPR018082 -
Vifaun6055g00001 399 SMART amb_all 173 339 IPR002022 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun6055g00001 12 397 Polysaccharide Lyase AT1G14420 50.472 9.13e-152 435
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun6055g00001 K01728 - gmx:100785801 574.704