Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun5999g00002 ATGGCCACCTTAGAATCAGCCATAACTGTTTTCGCACCTCAACGTTTTTCAAACAACTACCGTTTCCTTACAAAATCACCCACTTCCGTTAAACTCCCACCCACTTCATTCTCTTCTTCCATTTTTTCTCATAGCCACAACAAACTTCACTTATCTTCTTTCAGAACCCAAACGCCATGCTTTGCTTTACAAGAAGTAACAGAATCAACAATTGAAGATGAAAAAACAGAGGAAACGCAGACATTGGACAATGTTAAGAAGAAGTTAGCTGTTTTTAACTTACCTTGGTCAGTGTCCGCGCCAGACATCAAAGAACTCTTCAAGGAATGCGGAACCGTAACCGATGTCGAGATTGTAAAAAGGAAAGATGGGAAGGGAAAAGGTTATGCATTTGTTACTATGGATTCTGGAGAAGGGGCTCAGGCTGCTGTTGAACAGTTTGATGCTCGTGAAATATCAGGCAGGATAATAAGGGTAGAGTTTTCAAAGAGTTTCAAGAAACCTTCTCCTCCACCTCCTCCAGTCACCCCTCCAAGTCCCGCTCCTAGCGAAGCACGTCATGTACTTTATATATCCAACCTTGCATGGAAAGCAAGGTCTACACATCTTAGAGACATCTTTGCCGAGAATTTCAAAACACCAGTTTCAGCCAGGGTCGTCTTTCAAACCCCTGCTGGGAGATCTGCTGGGTATGGATTTGTTTCTTATCACACGGAAGAGGAAGTACAGTCTGCCATTGCTGCTTTGGAAGGGAAGGAGTTAATGGGACGGCCACTTCGCGTAAAAATAAGTGAAAAGAAAGTTAAAGAAGCTAGTAATGAAGAAGGTGAAAACCAAAATGCTGATGCGCAACTAGAAGGTGAAAACCAAAATGCTGATGCTCAACTAGAAGGTGAAAACCAAGATGCTGATGCTCAATTGGAAAAATCATAG 933 0.4244 MATLESAITVFAPQRFSNNYRFLTKSPTSVKLPPTSFSSSIFSHSHNKLHLSSFRTQTPCFALQEVTESTIEDEKTEETQTLDNVKKKLAVFNLPWSVSAPDIKELFKECGTVTDVEIVKRKDGKGKGYAFVTMDSGEGAQAAVEQFDAREISGRIIRVEFSKSFKKPSPPPPPVTPPSPAPSEARHVLYISNLAWKARSTHLRDIFAENFKTPVSARVVFQTPAGRSAGYGFVSYHTEEEVQSAIAALEGKELMGRPLRVKISEKKVKEASNEEGENQNADAQLEGENQNADAQLEGENQDADAQLEKS 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun5999g00002 310 SUPERFAMILY RNA-binding domain, RBD 169 270 IPR035979 GO:0003676
Vifaun5999g00002 310 Coils Coil 271 309 - -
Vifaun5999g00002 310 SUPERFAMILY RNA-binding domain, RBD 80 172 IPR035979 GO:0003676
Vifaun5999g00002 310 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 187 266 IPR000504 GO:0003723
Vifaun5999g00002 310 SMART rrm1_1 88 160 IPR000504 GO:0003723
Vifaun5999g00002 310 SMART rrm1_1 188 262 IPR000504 GO:0003723
Vifaun5999g00002 310 MobiDBLite consensus disorder prediction 266 310 - -
Vifaun5999g00002 310 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 157 IPR000504 GO:0003723
Vifaun5999g00002 310 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 189 260 IPR000504 GO:0003723
Vifaun5999g00002 310 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 164 IPR000504 GO:0003723
Vifaun5999g00002 310 MobiDBLite consensus disorder prediction 166 181 - -
Vifaun5999g00002 310 CDD RRM_SF 91 160 - -
Vifaun5999g00002 310 MobiDBLite consensus disorder prediction 163 182 - -
Vifaun5999g00002 310 PANTHER OS02G0815200 PROTEIN 34 267 - -
Vifaun5999g00002 310 Gene3D - 62 168 IPR012677 -
Vifaun5999g00002 310 MobiDBLite consensus disorder prediction 277 297 - -
Vifaun5999g00002 310 Gene3D - 169 279 IPR012677 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun5999g00002 91 267 Eukaryotic Initiation Factors Gene Family AT4G34110 31.250 1.17e-15 75.5