Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun5925g00001 ATGGAATCACCCGGAAAAGACCATTTGGTTGGAGGAGGAGAATCTAACGACGTTGGTAGAACCTTCAGTCACAGAGATGAACAAGAACATGAAGAACACAAACAACAACACCATAACTCTCAACCCCTTACCGACGATGGTGCCAGTCCCGGAAAGATATTTATAGGTGGATTAGCAAGAGAAACAACCATTGCTCAATTTATCAAGCACTTTGGTAAATACGGTGAGATTACGGAATCGGTTATCATGAAGGATAGGAAAACTGGCCAGCCTCGTGGTTTTGGGTTTATTACTTATGCCGACCCGGTGGTTGTTGACAAAATCATTGAAGATCTTCATGTCATAAATGGCAAGCAAATGAATTTAGGGACTTTTTCACACGCTATGGAGAAGTCAAAGATCACCAAATAA 411 0.4161 MESPGKDHLVGGGESNDVGRTFSHRDEQEHEEHKQQHHNSQPLTDDGASPGKIFIGGLARETTIAQFIKHFGKYGEITESVIMKDRKTGQPRGFGFITYADPVVVDKIIEDLHVINGKQMNLGTFSHAMEKSKITK 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun5925g00001 136 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 53 113 IPR000504 GO:0003723
Vifaun5925g00001 136 SMART rrm1_1 52 123 IPR000504 GO:0003723
Vifaun5925g00001 136 Gene3D - 17 133 IPR012677 -
Vifaun5925g00001 136 MobiDBLite consensus disorder prediction 1 52 - -
Vifaun5925g00001 136 MobiDBLite consensus disorder prediction 19 40 - -
Vifaun5925g00001 136 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 51 136 IPR000504 GO:0003723
Vifaun5925g00001 136 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 25 122 - -
Vifaun5925g00001 136 SUPERFAMILY RNA-binding domain, RBD 36 121 IPR035979 GO:0003676
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun5925g00001 44 116 Eukaryotic Initiation Factors Gene Family AT1G71770 33.333 1.70e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun5925g00001 K12741 - gmx:113001701 189.889