Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun5840g00002 ATGGACATGGATATGGACATGGACATGGATGCTATCCACCACCTTGAGTTCTCTGGACACGGCAGTACCCTCACGAACACCCCTACTTCTTCTGATGATGGTTATGGTTATAACTGGAACCACTGGTCTCCGATAGTTAACTGGGATAGCTTTACAGGTACCCCAGATGACTTTCACCACCTCATGGACACCATAATCGAGGACAGGACAACTGTCCTCCTCGATCAGTTCAGCCCAACCACGACCACCACAACCACAACTACCGATGAGGAAGAAGAAACAGAAACAACCACAACCACTACCACAAGCACACCAACAACAACACAAACAACACAAACAGTTGGCGATGATTTAAAAGGGCTAAAACTAGTGCACCTATTGATGGCTGGCGCGGAAGCCTTAACCGGCTCCACCAAGAGCCGCGACTTAGCTAAAGTGATATTGGTTCGGCTCAAGGAAATGGTTTCACAACACGCCAACGGCTCCAACATGGAAAGACTCGCCGCTTATTTCACCGAAGCTCTTCACGGACTACTAGAAGGCGCTGGGGGTGCGCACAACAACCACAACAACAAACATTACCTCACCACCACCGGGCCCCACGACAACCAAAACGACACACTCGCTGCTTTCCAATTACTTCAAGACATGTCTCCTTACGTCAAGTTCGGCCACTTCACAGCCAATCAGGCCATACTCGAGTCAGTGGCCCACCAACGCCGCGTCCATCTCATCGACTACGACATCATGGAAGGGGTCCAATGGGCTTCACTAATCCAAGCCCTAGCTTCCACCAACAACAGTCCACACCTCCGGATCACCGCATTATCACGAACCGGAACAGGCCGGAGATCGATCGCCACCGTGCAAGAAACTGGCCGCCGTTTAACCTCCTTCGCCGCATCTCTTGGTCAGCCGTTTTCTTTTCACCACTGCAGGTTAGACTCTGATGAAACTTTCCGTCCTTCTTCTTTGAAGCTTGTTCGAGGAGAGGCTTTGGTTTTCAACTGCATGCTCAATTTGCCTCATCTTAGTTACCGTGCACCCGACTCGGTTGCTTCGTTTTTAAACGGAGCAAAGACTTTAAACCCGAAGCTTGTGACGTTGGTGGAGGAGGAACAAGGATCTGTAGTTGGTGGATTCGTGGAGCGGTTCATGGACTCTCTTCATCATTACTCCGCAGTGTTTGATTCGTTGGAAGCGGGGTTTCCAATGCAGAATCGGGCCAGGGCTTTGGTGGAGCGAGTGTTCTTCGGGCCTCGAATTGCCGGCTCGCTGGGCCGGATATATAGAACAGGCGGAGAGGATGAGAGGACGTCGTGGGGAGAGTGGTTATCTGCGGCGGGGTTTCGAGGAGTTCCGGTAAGCTTTGCGAATCATTGCCAAGCGAAACTGCTGTTGGGACTTTTCAATGATGGGTATAAGGTGGAAGAGGTGGGTGCGGGTAGCAATAAGTTGGTGTTGGATTGGAAATCAAGGCGTTTGCTTTCTGCTTCCGTTTGGACTTGCTCTTCAGAATCTGTTTTATAG 1530 0.5078 MDMDMDMDMDAIHHLEFSGHGSTLTNTPTSSDDGYGYNWNHWSPIVNWDSFTGTPDDFHHLMDTIIEDRTTVLLDQFSPTTTTTTTTTDEEEETETTTTTTTSTPTTTQTTQTVGDDLKGLKLVHLLMAGAEALTGSTKSRDLAKVILVRLKEMVSQHANGSNMERLAAYFTEALHGLLEGAGGAHNNHNNKHYLTTTGPHDNQNDTLAAFQLLQDMSPYVKFGHFTANQAILESVAHQRRVHLIDYDIMEGVQWASLIQALASTNNSPHLRITALSRTGTGRRSIATVQETGRRLTSFAASLGQPFSFHHCRLDSDETFRPSSLKLVRGEALVFNCMLNLPHLSYRAPDSVASFLNGAKTLNPKLVTLVEEEQGSVVGGFVERFMDSLHHYSAVFDSLEAGFPMQNRARALVERVFFGPRIAGSLGRIYRTGGEDERTSWGEWLSAAGFRGVPVSFANHCQAKLLLGLFNDGYKVEEVGAGSNKLVLDWKSRRLLSASVWTCSSESVL 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun5840g00002 509 MobiDBLite consensus disorder prediction 97 113 - -
Vifaun5840g00002 509 Pfam GRAS domain family 123 502 IPR005202 -
Vifaun5840g00002 509 ProSiteProfiles GRAS family profile. 114 502 IPR005202 -
Vifaun5840g00002 509 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 96 497 IPR005202 -
Vifaun5840g00002 509 MobiDBLite consensus disorder prediction 78 113 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun5840g00002 86 505 GRAS Transcription Factor Family AT3G54220 34.793 7.29e-52 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vifaun5840g00002 GRAS 2.2e-99 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun5840g00002 - - tpra:123896871 830.861