Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun5798g00004 ATGCGTTGCCTTTCAACTATTTCTCAAACACTAGCAAGAATTTGGCTATTATTTTTCTTACTCACTCCTTCTATTCTCATTTCTGGTTTCCGAGATGAGACAAACAAAGTTATATCCATTGGGGTGATCATTGATGTTAATTCTCGAATTGGGAAAGAACAAGAAGTAGCCATGGACATTGCAGCCCAGAAATACAACAACACTTCAAAAGACTACAAGCTGGCTCTCTATTTTCAGAACTCCACCAAGGATACCATCGGAGCCGTCACACTTGCTGAAGAGATGATTAAGGTGCAAAAGGTGCAAGTGATTATAGGGATGCACACATGGCCAGAAGCAAGTATAGTAGCTGAAATAGGAAGCAAATCTCAAGTACCTATCATATCCTTTGCAGCACCTGCCATAACACCACCATTGATGAAAACTCGATGGCCTTTTCTGGTGAGACTAGCAAACAACGGTACAGCATATATAAAATGCATTGCTGACATAGTGCAGGCTTATAGCTGGAAAAGAGTAGTAGTAATCTACGAAGATGACGGGTATGGGGGAGATTATGGGATGTTAGCCCTCCTAACTGAGGCCCTTCAGGATGTGGATTCAATGATTGAACACCGCTTAGTCCTTCCCCCAATTTCATCTATACATGAACCAGGAGAGCTAGTCAGTGAAGAGATGATTAAGTTAAAACGAACACAGTCTCGGGTGTTCATAGTGCTTCAATCATCATTAGAAATGACAATCCATTTGTTCAAAGAAGCTTCAAAAGTTGGGCTGGTGGATAAAGAATCGGTTTGGATAATCCCAGAGAGCCTAACAAATTTGATGGACTCTATCAATAAATCTGTTATTTCCAATATGGAAGGAGCTTTAGGAATTAAAACCTACTACTCAGAAAGAAGCAGGGATTATCAAGACTTTGAGGCTCAGTTCAGGAGAACTTTTTGGTTAAAGAATCCAGAGGAGGATAACCGATACCCAGGATTTTATGCTCTACAAGCATATGATAGCATTAATATTGTAACTCAAGCAATCGACAGAATGGCCAGTAGAAACAATAGCATCCCAAAGAGTTTAATAAGAGAAATACAGTCTAGCAATTTCGTTGGTTTGAGTGGACATATTCAACTTGAAGCTGGACAACTCATGCAGAAGAATCTTGTCTTACGAATTGTAAATGTGGCTGGGAAGAGTTACAAGGAATTATGCTTTTGGACTCAACAACATGGCTTTACTACAGTCCTCCATACAGGACAAGGTGGAAATAAGGTTGCTGGAATTACAGAATGTTTCAGGGGTGTACGCTGGCCTGGGAATTTGGACCGTGATCCAAAGGGCTGGAACATGCCTACCAAACAATATCCATTGAAAATTGCAGTCAGAAGCAGAACCTCGTTTTACAAGTTTGTCAAGGTTGAGTATAGCCAGAATGGAAAAGATGATAAATATAGTGGATTTTGCATTGACATTTTTGAGCAAGTACAGAAACTTCTGGGGTACGATCTTCCATATAAATATCATGCCATCAATGGAACCTATAACGATTTGGTTCAGCTTGTCTATAACAAGACTTATGATGCTGTTATTGGAGATATGACCATAATAGAGGAAAGATTGCAGTATGTGGATTTTACAGTGGCATATGCAGAATCAGGATTATCAATGATAGTTCCAATGAAGTCTGGAGAATCAGCATGGATGTTTATGAAACCATTTACCTGGGAATTGTGGTTGGTTTCAGGTGCGATCTTGATTTACACAATGTTAGTTGTTTGGTATCTCGAGAGAGAACCCAATCCAGAGTTTCATGGAAACTGGAAGCTCCAGCTCAGCACAGCTTTTTGGTTTACTTTCTCCTCTTTGTTCTTTGCTCATAGGGAAAAAATGCACAGCAACTTAACTCGAGCGGTGATGATCTCATGGCTTATTCTCGTATTGATTCTCACCTCATGCTACACAGCTAGTCTTTCTTCAATGCTCACAGTTAAGCAGTTGCGACCAAATGTCACAGACATTCAGTGGCTGAAGAACAATAACAAGAAAGTTGGTTGTGACGGAGACTCCTTTGTTAGGACATTCCTAGAAAAAGTTGAAAAGTTCAAGCCAGAGAATATCATAAACATTACCAATGAATACAAGTATAATGAAGCATTCGCTAACAACAGCATAGCAGCTGCTTTTCTTGAGCTCCCATATGCAAAAGTATTCATCAGTGAATACTGCAAGAGATACACTGGCTTCACCCCTAGAAATAGATTTGGAGGATTGGGCTTTATGTTCCAGAAAGGCTCTCCTCTAACCAGAGATTTTTCTAAAGCTATATTACATCTCTCAGAAAAAGCAGAATTGAAGAGATTGGAAGAACAGTGGTTAATTACCTCACAGAGTTGCTCCAACGTGACGTCCTCCAATGATACGGATAGTTTGAATCTTGGAAGCTTATGGGTTCTATATGTCATCTCTGGCGCCACTTCTACTATTTGTGTGCTAATATCAGCCATCAGGTGTCTAATATCCAGGGAGACACATGAAGACGTTCCAAATGATGAAAGGGTGTGGAAAGCGGTTATTACATTTGCAAAGCTGATTCATGGCAAAAAGCTTGATGCTTCAAACAAGGAAATGGCTTCTCAACCAAAACATGTACATATAACAACACATGACATAGGAACCATGGAACCATATACACCTCAAAATAATTGTCTTATCAGACACTCTAAAAACACATCTTAG 2733 0.3977 MRCLSTISQTLARIWLLFFLLTPSILISGFRDETNKVISIGVIIDVNSRIGKEQEVAMDIAAQKYNNTSKDYKLALYFQNSTKDTIGAVTLAEEMIKVQKVQVIIGMHTWPEASIVAEIGSKSQVPIISFAAPAITPPLMKTRWPFLVRLANNGTAYIKCIADIVQAYSWKRVVVIYEDDGYGGDYGMLALLTEALQDVDSMIEHRLVLPPISSIHEPGELVSEEMIKLKRTQSRVFIVLQSSLEMTIHLFKEASKVGLVDKESVWIIPESLTNLMDSINKSVISNMEGALGIKTYYSERSRDYQDFEAQFRRTFWLKNPEEDNRYPGFYALQAYDSINIVTQAIDRMASRNNSIPKSLIREIQSSNFVGLSGHIQLEAGQLMQKNLVLRIVNVAGKSYKELCFWTQQHGFTTVLHTGQGGNKVAGITECFRGVRWPGNLDRDPKGWNMPTKQYPLKIAVRSRTSFYKFVKVEYSQNGKDDKYSGFCIDIFEQVQKLLGYDLPYKYHAINGTYNDLVQLVYNKTYDAVIGDMTIIEERLQYVDFTVAYAESGLSMIVPMKSGESAWMFMKPFTWELWLVSGAILIYTMLVVWYLEREPNPEFHGNWKLQLSTAFWFTFSSLFFAHREKMHSNLTRAVMISWLILVLILTSCYTASLSSMLTVKQLRPNVTDIQWLKNNNKKVGCDGDSFVRTFLEKVEKFKPENIINITNEYKYNEAFANNSIAAAFLELPYAKVFISEYCKRYTGFTPRNRFGGLGFMFQKGSPLTRDFSKAILHLSEKAELKRLEEQWLITSQSCSNVTSSNDTDSLNLGSLWVLYVISGATSTICVLISAIRCLISRETHEDVPNDERVWKAVITFAKLIHGKKLDASNKEMASQPKHVHITTHDIGTMEPYTPQNNCLIRHSKNTS 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun5798g00004 910 Pfam Receptor family ligand binding region 55 387 IPR001828 -
Vifaun5798g00004 910 Gene3D - 40 384 - -
Vifaun5798g00004 910 SMART GluR_14 457 793 IPR001320 GO:0015276|GO:0016020
Vifaun5798g00004 910 SUPERFAMILY Periplasmic binding protein-like I 35 447 IPR028082 -
Vifaun5798g00004 910 Gene3D - 153 408 - -
Vifaun5798g00004 910 SUPERFAMILY Periplasmic binding protein-like II 436 791 - -
Vifaun5798g00004 910 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 39 851 IPR015683 -
Vifaun5798g00004 910 Gene3D - 723 799 - -
Vifaun5798g00004 910 Gene3D - 450 564 - -
Vifaun5798g00004 910 FunFam Glutamate receptor 157 325 - -
Vifaun5798g00004 910 PIRSF IGluLR_plant 8 908 IPR017103 -
Vifaun5798g00004 910 CDD GluR_Plant 455 791 - -
Vifaun5798g00004 910 CDD PBP1_GABAb_receptor_plant 39 415 IPR044440 -
Vifaun5798g00004 910 Pfam Bacterial extracellular solute-binding proteins, family 3 478 791 IPR001638 -
Vifaun5798g00004 910 FunFam Glutamate receptor 455 566 - -
Vifaun5798g00004 910 Gene3D - 565 704 - -
Vifaun5798g00004 910 Pfam Ligand-gated ion channel 792 822 IPR001320 GO:0015276|GO:0016020
Vifaun5798g00004 910 FunFam Glutamate receptor 565 695 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun5798g00004 38 904 Ion Channels AT2G29120 31.849 1.70e-148 461