Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun5798g00003 ATGATTTTTTATGCTCAAACATTGAATTCAATTCCAAATTTTTTGCTTTGGCTTTCTTTAATAATCTTGCCTTTCCTATTCCAATGTCTTGCCAATAGTTCCCAAAGTACAACAAGTATTGGTGTGATCATGGATGTTAATTCTGAAACAGCTAAACAACAGAGAACAGCCATGCAAATTGCAGCTCAAAGTTTCAATAACTATTATAACAATCAAAACATAGTCATTTTCTTCCGTGATTCTGGTCGAAACCCTTTACAGGCAGCTTCAGTTGCTGAAGAATTAATCACTAAAGAAAAAGTTAAAGTAATTATTGGCATGGAAACATGGCAAGAAGCAGCTCTTGTTGCTGACCTTGGAGCAAAGTTTCAAGTACCAATAATTTCATTTTCTTCTCCACCATCAGTCTCGTCATCATTAGTGCAACTTCGTTGGCCTTTCTTGATTCAAATGTCACAAAATCTTTCTGTACAAACGAACTTCATAGCTGATATGATTCATGCTTTTAACTCTCAGAAAGTTATAATTATATATGAAGACAACCCTTATAGCAACGATTCTGGAATGTTAAGCCTCTTATCTGAGGCTCTCGAAAAGTTAAACTTGCAGATTGAGTATCTATTAGTTCTTCCAGCATTCACTTCTTTATCTGATCCGAAAGGGTTTGTTCTTGATGAGTTGTTGAAGTTGTTGCAGTTAAAATCTCGTGTTTTTGTTGTACTTCAAGCATCATTGCCTATGGTGAACCATTTGTTTAGAGAAGCTAAGAAAATTGGATTATTGGAGAAAGAATCATCTTGGATAATCAATGAGGAGATTACAAGCATGTTGGACTATGTAGATAAATCAGTTTTATCTTCTATGGAAGGCGTTTTGGGAATCAAAACCAACTATTGTACAAGCTCTAGTGCTTATACTCATTTGCAGGAAAATTTTCAAGCTGAGAATACAGAAAAAGTTGAGTTCAAACCAAGATCAAATGTTTTGCTAGCTTATGATAGCATCACAATTGTCACAAAGGCTTTGGAGAAAATGAATACTAATTCTAGTAGCTCAAAAATTTTACTGGAGAAAATGTTATCTTCCAATTTCAATGGCTTAATAGGTGATATAAGATTCAAAGAAAGACAACTATACTACACTCCAATGTTAAGAGTCATAAAAGTGGTTGATAATGATAAGAAAGATATTGAATTGGACTTTTGGACACCAAAATTGAAGTTGGCTAGATCTCTTAGAGAGAAAACAAGTGATGGTATTAAAGAAGAAAGCTTAAATGACTGTGTACCTAAGAAATGGAAAATACTGAATGATACAAACCCTTTACAAGTTGCAATTCCTATGAATCCTGCATATGATGCCTTTGTGAAAGTCTCTCAAAATCAAAATGCTACCGGTTTTTGTATTGACCTTTTTCAAGAGATCCGAGAAATTCTGCGTTACACATATTCTGATCTTCCCTATAATTTTACCCCTTTCTCCGAATCTTTTGATGATATTTTGCGTGAAGTACAAGATAAGACCTATGATGCTATTGTAGGAGATGTAACAATACTTGCCCGCCGAGCAAGGAATGTATCATTCACTCAACCATATACTGAATCGGGCTTATCACTCATACTTCCCGCAGAAACTGAAGATTCAGCATGGTTGTTTATGAAACCATTTAGCATGGTAATGTGGATTGCAACTATTGGTATCCTCATCTACACAATGATTACCATTTGGTTCTTGGAACATCACTTGAATCCTGAATTTGGTGGACCATTGAAAACCCAGATCAGCACGACTCTGTGGTTTGCTTTTTCTTCTCTATTTTTTGCTCAGAGGGAAAAAATAAGCAGCAACTCAGCAAGAGTAGTAGTTGGAGTATGGTTATTTCTTGTGTTTGTTATAACCTCCAGCTACACTGCAAATCTTTCATCATTGCTTACTGTCCAAAAATTGAGGTCAGATAGAGACATTGAATGGCTTAAACAAAAAAATCTATCAGTTGGTTGTTTTAACACCAGTACCTTTGTAAAGGACTACTTGGTCGAAGTCTACAATTTCCCTAGGCACCAAGTTGTAGATGTTGAGAATGAAGATGACATTTTGGATAAATTCAAGAGCAAAAACATTTCTGCTCTCTTTGTTGAGAGCCCATATGAGAAGGTTTTCTTGAATAAATACTGCAAAGATTACACTGCAACTACAGCAGCCTATAAATTTGGAGGATTGGGATTTGTATTTCAAAAAGATGATCCAATGGCAAAAGACTTTTCTGAAGCAATTTTAACACTAGCAGAAAATGGAAAATTAAAAAATTTGGAAGATAGATGGTTAACACCTTCCAATAAGTGCTCAAACAACTCACCATCTCCAGAAGAAACTGAGAGTCTGACTTTTGACAAATTTTGGAGACTCTATGTCATATGTGCTGCCACTTCCACCATCTGCTTACTAGTAGCTTTGTTGAAGAAGTGTTTACATAAACATAACCACTATGAAGAAGCTGATCAACTTCCTCAAGGAAGTGTAATCTCCAAGTCTGACGATGATAACAATAATAATGATTCTCAGAGAGCAATTAGAGTTGGTACAGGTTTAAACATTGAGAATCTCATGAGTTTAAATAAATCTGCAACTTTTGGTGTACGTCGTCGAAATTCGCCAAAATTGGAGACTATAAGCATTTCTGATGAACCGGGCAATCTGCGTCGCTCCCGACCAGCAGCCATGCCATAG 2727 0.3579 MIFYAQTLNSIPNFLLWLSLIILPFLFQCLANSSQSTTSIGVIMDVNSETAKQQRTAMQIAAQSFNNYYNNQNIVIFFRDSGRNPLQAASVAEELITKEKVKVIIGMETWQEAALVADLGAKFQVPIISFSSPPSVSSSLVQLRWPFLIQMSQNLSVQTNFIADMIHAFNSQKVIIIYEDNPYSNDSGMLSLLSEALEKLNLQIEYLLVLPAFTSLSDPKGFVLDELLKLLQLKSRVFVVLQASLPMVNHLFREAKKIGLLEKESSWIINEEITSMLDYVDKSVLSSMEGVLGIKTNYCTSSSAYTHLQENFQAENTEKVEFKPRSNVLLAYDSITIVTKALEKMNTNSSSSKILLEKMLSSNFNGLIGDIRFKERQLYYTPMLRVIKVVDNDKKDIELDFWTPKLKLARSLREKTSDGIKEESLNDCVPKKWKILNDTNPLQVAIPMNPAYDAFVKVSQNQNATGFCIDLFQEIREILRYTYSDLPYNFTPFSESFDDILREVQDKTYDAIVGDVTILARRARNVSFTQPYTESGLSLILPAETEDSAWLFMKPFSMVMWIATIGILIYTMITIWFLEHHLNPEFGGPLKTQISTTLWFAFSSLFFAQREKISSNSARVVVGVWLFLVFVITSSYTANLSSLLTVQKLRSDRDIEWLKQKNLSVGCFNTSTFVKDYLVEVYNFPRHQVVDVENEDDILDKFKSKNISALFVESPYEKVFLNKYCKDYTATTAAYKFGGLGFVFQKDDPMAKDFSEAILTLAENGKLKNLEDRWLTPSNKCSNNSPSPEETESLTFDKFWRLYVICAATSTICLLVALLKKCLHKHNHYEEADQLPQGSVISKSDDDNNNNDSQRAIRVGTGLNIENLMSLNKSATFGVRRRNSPKLETISISDEPGNLRRSRPAAMP 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun5798g00003 908 MobiDBLite consensus disorder prediction 888 908 - -
Vifaun5798g00003 908 Pfam Bacterial extracellular solute-binding proteins, family 3 448 776 IPR001638 -
Vifaun5798g00003 908 Gene3D - 550 688 - -
Vifaun5798g00003 908 Pfam Ligand-gated ion channel 777 808 IPR001320 GO:0015276|GO:0016020
Vifaun5798g00003 908 FunFam Glutamate receptor 158 323 - -
Vifaun5798g00003 908 SUPERFAMILY Periplasmic binding protein-like II 430 776 - -
Vifaun5798g00003 908 Gene3D - 437 549 - -
Vifaun5798g00003 908 FunFam Glutamate receptor 549 679 - -
Vifaun5798g00003 908 SMART GluR_14 441 777 IPR001320 GO:0015276|GO:0016020
Vifaun5798g00003 908 Pfam Receptor family ligand binding region 55 388 IPR001828 -
Vifaun5798g00003 908 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 39 844 IPR015683 -
Vifaun5798g00003 908 Gene3D - 718 783 - -
Vifaun5798g00003 908 Gene3D - 35 216 - -
Vifaun5798g00003 908 SUPERFAMILY Periplasmic binding protein-like I 35 394 IPR028082 -
Vifaun5798g00003 908 Gene3D - 294 378 - -
Vifaun5798g00003 908 PIRSF IGluLR_plant 9 895 IPR017103 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun5798g00003 14 828 Ion Channels AT2G29120 30.440 1.90e-119 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun5798g00003 - - mtr:11441834 1264.6