Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun5789g00004 ATGGGTGGCAATGGAAAACACAGGTGGAAAATCTCCTTCCATCGTCCTTCCTCTCACTCTAAACCCCTCCAACCTCCCAACGAGTTACTATGCCCTATCACCGGGTCATTAATGTCCGACCCGGTTGTCGTCTCCTCGGGTCAAACCTTCGAACGTCTCTCCGTTCAAGTATGCCAAGACTTAAAATTCTCCCCACTCCTAGAAGACGGGTCCCGACCCGATTTCTCAACCATCATCACCAACTTAGCCATCAGAAAAACCATCCTCAACTGGTGCGACAAATCTCATACCCAACACCCGCCCACACCGGATTACGCCGCCGTGGAGAAGCTTGTACGAGAAAAAATGGTGCCACTGGAACCGATTAGGGTTTCTGAAAAGGAGCTGCTCAACGCGGTGGCGGATAACCCGCCGGTGATATTCTCCCACGCCGCGACTGAGGTAGGGCCGCGTGTCAATCACTTCAATTCAGGTTCTTCATCTGAGGAATCAGTTATAATCCCGTCGAGTCCAGAAACGCCTTTACCTTTCACGGTTCGTCCAACGTGTTTCTCTCCTTCTTCATCTTCCTCCTTCGAGATCGAAGTTCAAAACCCTAACGTACCTGTTTCGGAAGAGGAGGAAATCCTACTGAAGAAGCTGAAGAGCAACGAGGTTTTTGAACAAGAACAAGGGGTTATCTCGCTTAGGAGCATCACGAGGAGCAGAGAGGAAGCTAGGGTTTCGTTATGCACGCCGCGGATTCTTTCGTCGCTGCGCTCTTTGATTGACTCGCGTTACGTTGTGGTTCAGGTCAACGCCGTTGCTTCGTTGGTCAACCTTTCGCTTGAGAAATCCAACAAGATGAGGATTGTGAGGTCAGGATTTGTTCCGTTTCTCATCGATGTGTTGAAGGGAGGATCCAGTGAGTCGCAGGAGCACGCTGCGGGTGCAATTTTTAGTTTGGCTTTGGATGATGATAACAAGATGGCGATTGGAGTTCTCGGCGCGTTGCAGCCGCTTATGCACGCGATGAGGTCTGAATCGGAGCGGACTCGCCATGACTCGGCGCTTGCACTTTATCATTTGACACTGGTTCAGAGTAACAGAGTCAAGCTTGTGAAACTTGGGGTTGTTCCTACATTGATTTCAATGGTGATGACTGGGACAATGGCAAGTCGGGTTTTGTTGATTCTGTGTAATCTGGCGATGTGCGTGGAGGGAAGAACGTCTATGCTTGATGCCAATGCAGTGGAGTGTCTGGTGAGTTTGTTGAGAGGAAACGAGTTGGACTCAGAGGCGACTCGTGAGAATTGTGTTGCTGCTCTGTATGCGTTGAGTCACGGGAGCTTGAGGTTTAAAGGGTTGGCGAAGGAAGCGAAAGCTGTGGAGGTTTTAAGGGTAATTGAAGAAACCGGGACAGAGAGGGCGAGGGAGAAGGCCAAAAGGGTGTTGCAGAAGATGAGGGGTTTTGAAGATGGTGATGACGAAGATGGTGAGTTTGATAGTCTTTTTGAATCGGGTGGCTTGAGTCGAGCTCGTTACCGAGTTGCTGCAGCTAGGAACAACAACCTTATCAATTCTACTACATTTTAG 1575 0.4971 MGGNGKHRWKISFHRPSSHSKPLQPPNELLCPITGSLMSDPVVVSSGQTFERLSVQVCQDLKFSPLLEDGSRPDFSTIITNLAIRKTILNWCDKSHTQHPPTPDYAAVEKLVREKMVPLEPIRVSEKELLNAVADNPPVIFSHAATEVGPRVNHFNSGSSSEESVIIPSSPETPLPFTVRPTCFSPSSSSSFEIEVQNPNVPVSEEEEILLKKLKSNEVFEQEQGVISLRSITRSREEARVSLCTPRILSSLRSLIDSRYVVVQVNAVASLVNLSLEKSNKMRIVRSGFVPFLIDVLKGGSSESQEHAAGAIFSLALDDDNKMAIGVLGALQPLMHAMRSESERTRHDSALALYHLTLVQSNRVKLVKLGVVPTLISMVMTGTMASRVLLILCNLAMCVEGRTSMLDANAVECLVSLLRGNELDSEATRENCVAALYALSHGSLRFKGLAKEAKAVEVLRVIEETGTERAREKAKRVLQKMRGFEDGDDEDGEFDSLFESGGLSRARYRVAAARNNNLINSTTF 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun5789g00004 524 SMART arm_5 236 276 IPR000225 GO:0005515
Vifaun5789g00004 524 SMART arm_5 318 358 IPR000225 GO:0005515
Vifaun5789g00004 524 SMART arm_5 398 441 IPR000225 GO:0005515
Vifaun5789g00004 524 SMART arm_5 277 317 IPR000225 GO:0005515
Vifaun5789g00004 524 FunFam RING-type E3 ubiquitin transferase 205 481 - -
Vifaun5789g00004 524 Gene3D - 207 384 IPR011989 -
Vifaun5789g00004 524 SMART Ubox_2 28 91 IPR003613 GO:0004842|GO:0016567
Vifaun5789g00004 524 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 103 IPR013083 -
Vifaun5789g00004 524 PANTHER U BOX DOMAIN-CONTAINING 25 481 - -
Vifaun5789g00004 524 SUPERFAMILY ARM repeat 208 481 IPR016024 -
Vifaun5789g00004 524 Pfam Armadillo/beta-catenin-like repeat 318 357 IPR000225 GO:0005515
Vifaun5789g00004 524 SUPERFAMILY RING/U-box 10 99 - -
Vifaun5789g00004 524 MobiDBLite consensus disorder prediction 1 26 - -
Vifaun5789g00004 524 Pfam U-box domain 26 94 IPR003613 GO:0004842|GO:0016567
Vifaun5789g00004 524 ProSiteProfiles U-box domain profile. 24 98 IPR003613 GO:0004842|GO:0016567
Vifaun5789g00004 524 Gene3D - 385 483 IPR011989 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun5789g00004 1 524 U-box Gene Family AT5G65200 57.374 0.0 573
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun5789g00004 - - gmx:100784564 736.873