Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun5740g00001 ATGACTTCTCCTATGAATGATGATCACATTCACATGATCACCTTCACCTCCTTGTTCTTGTTCTTGACAATTTTTCCAACAACAATTTGCCAACAACAACATAACAAACATGAAGATTGTCTCAAACCATACTCATGTGGTGAAGTTTCCAACATATATTATCCATTTTGGGGACAAAATAGACCAAGTTATTGTGGCATCAACAATGATGAATTCCACCTCAAATGTGACACTAATCATCACAACACATCGATTCAAATCGCTTCACAAAATTTCCAAGTCTTAATCATTAATCAATTTGTTTACACCATGACAATGTTTCGAAAAGGCCTTGTTTATGATAATTGTTCTTCTGCTTTAACCAACACTTCTTTAAATCCGAGTGACTTTCATTATATGTCTAATGTGAAGAACATCACTATTTTGTATAACTGTCCTAATGACATCAAGCTTCCGAATGGCACGAAGATGAACTCGTTTTCATGCAAGGAGGATTCGAGCAAGCGCGCTTTCTATGTGGATTCTGAAACAGCAGAAGAAGTAAAATGTGAAGGAGTTCGTATTGAAGTTCAGGTAACAAAGGAGGTGAAACTTGGTGGTGGAATTGATGAGCTGAACAAGGCTTTGAGTGGTGGATTTGGAGTGGAATATGTTGCAGATACTCAAAATTGCTTAAAATGCATTTTAAGTAATGGAAGTTGTGGAGGGAATGATATGTCTCAGTTTTCATGTTATTGTCTTGATGGAACTCAAGGTTTAGATTGTTCTCAACGCGGCGACAATAGATGGAATTGGAAAAGGAAGGTTGCTGTAGGAGTTGCTACTGCTGTGCTCAGTGCAGTTTCTGTAGGCATTGCTTTCTACATCTATTATTATTGCAGAAAGAAGAAAAAGAATGTTCATGCAGTATCATTTGCCGCACTATCTCACTGTGCTTCTGCTTCTGGTTCTGGTTCAAATGTCACTGAAAAGGGAGGTAGATACTGTGGAGTCCATTTCTTCACCTATAGTGAACTTGAAAAGGCCACAAACAACTTTGATTCTACAAGAGCACTAGGAGATGGAGGCTTTGGCACAGTCTACTTTGGAAAACTCCGGGACGAGCGTTTGATTGCGGTGAAACGCATGTATGAGAACAACTTCAGGAGAGTTGAGCAATTTGTGAATGAAGTTGAGATCCTAACTCGTTTACACCATCAAAATCTTGTGTCTCTATACGGATGCACTTCGCGCCACAGTCGAGAGCTTCTGCTTGTATATGAATATGTCCCTAATGGAACTGTTGCCGATCACCTTCATGGTTCAAAATCAAAACCTGGCATGCTACCTTGGCCAGTCCGAATGAACATTGCAGTAGAAACTGCTAGTGCATTGGTATATCTTCATGCATCTGACATCATCCATAGAGATGTGAAAACCAACAATATACTACTAGACAATCATTTTAGTGTGAAAGTAGCCGATTTTGGACTTTCGCGTCTATTTCCAAATCACGTCACACACATTTCAACCGCTCCACAAGGGACTCCCGGTTATGTGGATCCGGAGTACCATTTGTACTATCAACTTACCGATAAAAGCGATGTCTTTAGCTTTGGAGTTGTGTTGATTGAGCTGATATCATCTATGCCTGCTGTTGATATATCACGGAACAAGCAAGACATCAATTTGTCTAACATGGCTATTAAGAAGATTCAAAATGGGGCATTGCACGAGCTTGTTGATCCTACACTTGGTTTTGAATCAGATTTCAAGGTAAGGAAAATGATCAATGCGGTCGCGGAGTCAGCATTTCAGTGTTTGCAGAGTTCTAAAGATGTTAGACCTTCTATGGTAGAAGTGATGGAAAGGCTTAAGGATATTCAGAGTGATGGAACATATAATTATAAACCTGAGGTGTTGGATATCTCAAGAGATGATGATAGTGGTTTGGTCAAGAATGAGCCACCACCATCATCACCAGATTCAAACATCAATACTTTTCCTTGA 1989 0.3952 MTSPMNDDHIHMITFTSLFLFLTIFPTTICQQQHNKHEDCLKPYSCGEVSNIYYPFWGQNRPSYCGINNDEFHLKCDTNHHNTSIQIASQNFQVLIINQFVYTMTMFRKGLVYDNCSSALTNTSLNPSDFHYMSNVKNITILYNCPNDIKLPNGTKMNSFSCKEDSSKRAFYVDSETAEEVKCEGVRIEVQVTKEVKLGGGIDELNKALSGGFGVEYVADTQNCLKCILSNGSCGGNDMSQFSCYCLDGTQGLDCSQRGDNRWNWKRKVAVGVATAVLSAVSVGIAFYIYYYCRKKKKNVHAVSFAALSHCASASGSGSNVTEKGGRYCGVHFFTYSELEKATNNFDSTRALGDGGFGTVYFGKLRDERLIAVKRMYENNFRRVEQFVNEVEILTRLHHQNLVSLYGCTSRHSRELLLVYEYVPNGTVADHLHGSKSKPGMLPWPVRMNIAVETASALVYLHASDIIHRDVKTNNILLDNHFSVKVADFGLSRLFPNHVTHISTAPQGTPGYVDPEYHLYYQLTDKSDVFSFGVVLIELISSMPAVDISRNKQDINLSNMAIKKIQNGALHELVDPTLGFESDFKVRKMINAVAESAFQCLQSSKDVRPSMVEVMERLKDIQSDGTYNYKPEVLDISRDDDSGLVKNEPPPSSPDSNINTFP 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun5740g00001 662 ProSitePatterns Protein kinases ATP-binding region signature. 352 374 IPR017441 GO:0005524
Vifaun5740g00001 662 ProSitePatterns EGF-like domain signature 1. 244 255 IPR000742 -
Vifaun5740g00001 662 ProSiteProfiles Protein kinase domain profile. 346 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifaun5740g00001 662 Gene3D Transferase(Phosphotransferase) domain 1 423 630 - -
Vifaun5740g00001 662 SUPERFAMILY Protein kinase-like (PK-like) 328 635 IPR011009 -
Vifaun5740g00001 662 MobiDBLite consensus disorder prediction 638 662 - -
Vifaun5740g00001 662 FunFam Wall-associated receptor kinase-like 20 423 630 - -
Vifaun5740g00001 662 Pfam Protein kinase domain 348 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifaun5740g00001 662 Gene3D Phosphorylase Kinase; domain 1 320 422 - -
Vifaun5740g00001 662 Pfam Wall-associated receptor kinase C-terminal 175 248 IPR032872 -
Vifaun5740g00001 662 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 16 659 IPR044652 GO:0004672
Vifaun5740g00001 662 SMART serkin_6 346 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifaun5740g00001 662 Pfam Wall-associated receptor kinase galacturonan-binding 40 105 IPR025287 GO:0030247
Vifaun5740g00001 662 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun5740g00001 31 656 Receptor kinase-like Gene Family AT1G25390 43.079 1.24e-150 448
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vifaun5740g00001 Pkinase 1.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun5740g00001 - - gmx:100794703 865.914