Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun5593g00002 ATGGAGCAAAGAAGGCGTTGCCACGATGTGTTCTGGTTAGGATTATTTGTGATCCAATTAATTGGATTGGGTTTTGTCCTTGTCATTTTAGGCGTTAACAGATTCAAGAAAAAGAATCGCCTTGACATTGACAAGTACACATACCGCTTCATGGAAAATCAAGCTGGTCTCACAGAGGATTACTGGCCACTCTATGCTGTTGCCGGCGGTGTTGGGACTGCTCTTGGATGGAGTTGGTTGTTGTTGTTGGCTCTGCACTTTTTGTATATTATTTCTGTCATAAATAGACTTCCATTTACAATGTTGGTATTACAAAAGGCTGTGAAAATGGTATGGAATCTTCCTGAGGTTTTGAGAGTAGCATACGCGACTATGGCTTTGGTGCTTTTATGGATGGCCTTATGGTCATTTGGGGCTGCTGGTGTTGTAGTTTCAAGCATGGGTGACGGTGGACGCTGGTGGCTTCTTGGGGTCCTCTCCGTAAGCTTATTTTGGACAGGTGTTGTGCTTTGTAATACTTTACATGTCATAGTGTCTGGGACACTGGTTCGTGTTACTATCCATGGTAGTTGCGAGGCTGCAACAACCACCACCATATCCGCCTTCCATGCTTTTGCGATTTGCTTAACTAGCTTTGGCACTAAACTGGCTTGTGAGTAA 660 0.4409 MEQRRRCHDVFWLGLFVIQLIGLGFVLVILGVNRFKKKNRLDIDKYTYRFMENQAGLTEDYWPLYAVAGGVGTALGWSWLLLLALHFLYIISVINRLPFTMLVLQKAVKMVWNLPEVLRVAYATMALVLLWMALWSFGAAGVVVSSMGDGGRWWLLGVLSVSLFWTGVVLCNTLHVIVSGTLVRVTIHGSCEAATTTTISAFHAFAICLTSFGTKLACE 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun5593g00002 219 PANTHER CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44) 82 213 IPR007603 GO:0022857|GO:0055085
Vifaun5593g00002 219 ProSitePatterns Tub family signature 2. 204 219 IPR018066 -
Vifaun5593g00002 219 Pfam Plasma-membrane choline transporter 80 188 IPR007603 GO:0022857|GO:0055085
Vifaun5593g00002 219 SUPERFAMILY Tubby C-terminal domain-like 199 219 IPR025659 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun5593g00002 199 219 TUB Transcription Factor Family AT1G53320 90.476 6.45e-06 44.3