Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun5593g00001 ATGGAGCAAAGAAGGCGTTGCCACGATGTGTTCTGGTTAGGATTATTTATGATCCAATTAATTGGATTGGGTTTTGTCCTTGTCATTTTAGGCGTTAACAGATTCAAGAAAAAGAATCGCCTTGACATTGACAAGTACACATACCGCTTCATGGAAAATCAAGCTGGTCTCACAGAGGATTACTGGCCACTCTATGCTGTTGCCGGCGGTGTTGGGACTGCTCTTGGATGGAGTTGGTTGTTGTTGTTGGATAGACTTCCATTTACAATGTTGGTATTACAAAAGGCTGTGAAAATGGTATGGAATCTTCCTGAGGTTTTGAGAGTAGCATACGCGACTATGGCTTTGGTGCTTTTATGGATGGCCTTATGGTCATTTGGGGCTGCTGGTGTTGTAGTTTCAAGCATGGGTGACGGTGGACGCTGGTGGCTTCTTGGGGTCCTCTCCGTAAGCTTATTTTGGACAGGTGTTGTGCTTTGTAATACTTTACATGTCATAGTGTCTGGGACACTGGTTCGTGTTACTATCCATGGTAGTTGCGAGGCTGCAACAACCACCACCATATCCGCCTTCCATGCTTTTGCGATTTGCTTAACTAGCTTTGGCACTAAACTGGCTTGTGAGTAA 627 0.4482 MEQRRRCHDVFWLGLFMIQLIGLGFVLVILGVNRFKKKNRLDIDKYTYRFMENQAGLTEDYWPLYAVAGGVGTALGWSWLLLLDRLPFTMLVLQKAVKMVWNLPEVLRVAYATMALVLLWMALWSFGAAGVVVSSMGDGGRWWLLGVLSVSLFWTGVVLCNTLHVIVSGTLVRVTIHGSCEAATTTTISAFHAFAICLTSFGTKLACE 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun5593g00001 208 ProSitePatterns Tub family signature 2. 193 208 IPR018066 -
Vifaun5593g00001 208 Pfam Plasma-membrane choline transporter 73 177 IPR007603 GO:0022857|GO:0055085
Vifaun5593g00001 208 SUPERFAMILY Tubby C-terminal domain-like 188 208 IPR025659 -
Vifaun5593g00001 208 PANTHER CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44) 83 202 IPR007603 GO:0022857|GO:0055085
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun5593g00001 188 208 TUB Transcription Factor Family AT1G53320 90.476 5.95e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun5593g00001 - - tpra:123911661 305.064