Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun5477g00001 ATGGTAACCATTCGTCCAGATGAAATTAGTAAAATTATCCGTGAACGTATTGAGCAATATAATATCGAAGTAAAAATTGTAAATACAGGTACCGTACTTCAAGTAGGCGATGGTATTGCTCGTATTTATGGTCTTGATGAAGTAATGGCGGGTGAATTAGTAGAATTTGAAGAAAGGAAGTTTCGTAAAAGCAACAGGAAGAATTGGTCAGATACCGCTATTGGTCAAAAAGAATCTTTTGTGGCTCAAGTTGTAACTTCTTTACAAGAAAGAGGAGCAATGGAATACACTATTATAATGGCTGAAACAACAAATTCCCCAGCTACATTACAATACCTCACGCCTTATACAGGAGCAGCTATGGCTGAATATTTTATGTACCGTGAACGCCACACTTTAATCATTTATGATGATACCTCCAAACAAGCACAGGCTTATCGCCAAATGTCTCTTCTATTACGAAGACCACCAGGTCGTGAAGCTTATCCCGAAGATGTTTTTTATTTACATTCGCGTCTTTTGGAAAGAGCCACTAAATTAAGTTCTCAGTTAGGTGAAGGAAGTATGACTGCTTTACCAATAGTTGAGACCCAATCAGGAGATGTTTCAGCTTATATTCCTACTAATGTAATTTCTATTACAGAAGGCCAAATATTCTTATCTGCCAATTTATTCAATGCAAGGATCAGGCCCGCAATTAATATGGGTATTTCTGTTTCCAGAGTTGGATCGGCGGCTCAAATAAAATCCATGAAACAAGTAGCTGGTAAATTAAAATTGGAATTGGCACAATTCGCAGAATTAGAAGCTTTTGCACAATTCTCTTCAGATCTCGATAAAGCCATGCAAAATCAATTGGCAAGAGGTCAACGATTGCGCGAGTTGCTTAAACAATCCCAATCAGTTCCTCTTACTGTGGAAGAACAGATAATAACTATTTATACTGGAACAAACGGTTATCTTGATTCATTAGAAATTGAACAGGAACAAGTAGAAAAAAATTGA 1005 0.3692 MVTIRPDEISKIIRERIEQYNIEVKIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEERKFRKSNRKNWSDTAIGQKESFVAQVVTSLQERGAMEYTIIMAETTNSPATLQYLTPYTGAAMAEYFMYRERHTLIIYDDTSKQAQAYRQMSLLLRRPPGREAYPEDVFYLHSRLLERATKLSSQLGEGSMTALPIVETQSGDVSAYIPTNVISITEGQIFLSANLFNARIRPAINMGISVSRVGSAAQIKSMKQVAGKLKLELAQFAELEAFAQFSSDLDKAMQNQLARGQRLRELLKQSQSVPLTVEEQIITIYTGTNGYLDSLEIEQEQVEKN 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun5477g00001 334 PANTHER ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 72 330 IPR005294 GO:0015986|GO:0045261|GO:0046933
Vifaun5477g00001 334 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 11 59 IPR036121 GO:0046034|GO:1902600
Vifaun5477g00001 334 ProSitePatterns ATP synthase alpha and beta subunits signature. 231 240 IPR020003 GO:0005524
Vifaun5477g00001 334 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 72 246 IPR027417 -
Vifaun5477g00001 334 Gene3D - 65 247 IPR027417 -
Vifaun5477g00001 334 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 72 240 IPR000194 GO:0005524
Vifaun5477g00001 334 FunFam ATP synthase subunit alpha 248 333 - -
Vifaun5477g00001 334 CDD ATP-synt_F1_alpha_C 251 328 IPR000793 GO:0015986
Vifaun5477g00001 334 Pfam ATP synthase alpha/beta chain, C terminal domain 247 328 IPR000793 GO:0015986
Vifaun5477g00001 334 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 248 328 - -
Vifaun5477g00001 334 Pfam ATP synthase alpha/beta family, beta-barrel domain 29 58 IPR004100 GO:0046034|GO:1902600
Vifaun5477g00001 334 Gene3D - 248 333 IPR038376 -
Vifaun5477g00001 334 FunFam ATP synthase subunit alpha, mitochondrial 55 247 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun5477g00001 87 246 Primary Pumps ATPases(2) AT1G76030 32.298 3.75e-19 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun5477g00001 K02111 - gmx:3989298 431.024