Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun542g00001 ATGGTTTCGCTCAAACTCCAAAAGCGTCTCGCCGCCAGTGTCCTCAAGTGCGGAAGGGGAAAGGTCTGGCTAGATCCAAATGAGGGAAACGAGATTTCTATGGCTAACTCTCGCCAAAACATAAGGAAGCTTGTTAAGGATGGGTTTATCATCAGGAAACCTACCAAGATTCACTCCAGATCACGTGCTCGTAGGATGAAGGAGGCGAAGAGGAAAGGAAGACACTCTGGATATGGTAAGCGTAAGGGTACCAGGGAGGCAAGGCTTCCAACAAAGATCCTTTGGATGAGGAGAATGCGTGTGCTCAGGCGTTTGCTCCGCAAGTACCGTGAGGCCAAGAAGATTGACAAGCATATGTACCATGACATGTACATGAAGGTTAAGGGTAATGTGTTTAAGAATAAGAGGGTTCTAATGGAGAGCATCCACAAGTCTAAAGCCGAGAAGGCAAGAGAGAAGACCTTATCCGACCAGTTTGAGGCCAAGCGTGCCAAGAACAAGGCCAGCCGAGAAAGGAAGTTTGCTCGTAGGGAGGAGCGTTTTGCTCAAGGTCCTGGAGGAGGAGAGAAGCCAGCATCAGCTCCTACTGCTGCTCCACCAGCCGAAGTAGCAAAGCAAACCCAACCATCAAAGAAATCAAAGAAGGCAGTGGCAGCTTGA 660 0.4924 MVSLKLQKRLAASVLKCGRGKVWLDPNEGNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREERFAQGPGGGEKPASAPTAAPPAEVAKQTQPSKKSKKAVAA 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun542g00001 219 Gene3D - 2 56 IPR015972 GO:0003735|GO:0005840|GO:0006412
Vifaun542g00001 219 SMART Ribosomal_L19e_2 3 146 IPR000196 GO:0003735|GO:0005840|GO:0006412
Vifaun542g00001 219 Hamap 50S ribosomal protein L19e [rpl19e]. 3 149 IPR000196 GO:0003735|GO:0005840|GO:0006412
Vifaun542g00001 219 MobiDBLite consensus disorder prediction 144 219 - -
Vifaun542g00001 219 FunFam Ribosomal protein L19 1 56 - -
Vifaun542g00001 219 ProSitePatterns Ribosomal protein L19e signature. 7 26 IPR023638 -
Vifaun542g00001 219 MobiDBLite consensus disorder prediction 57 85 - -
Vifaun542g00001 219 MobiDBLite consensus disorder prediction 144 184 - -
Vifaun542g00001 219 CDD Ribosomal_L19e_E 4 167 IPR033935 GO:0003735|GO:0022625
Vifaun542g00001 219 SUPERFAMILY Ribosomal protein L19 (L19e) 3 144 IPR035970 GO:0003735|GO:0005840|GO:0006412
Vifaun542g00001 219 Pfam Ribosomal protein L19e 4 145 IPR000196 GO:0003735|GO:0005840|GO:0006412
Vifaun542g00001 219 FunFam Ribosomal protein L19 57 189 - -
Vifaun542g00001 219 PANTHER 60S RIBOSOMAL PROTEIN L19 1 187 IPR039547 GO:0003723|GO:0003735|GO:0022625
Vifaun542g00001 219 Gene3D - 57 185 - -
Vifaun542g00001 219 MobiDBLite consensus disorder prediction 57 79 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun542g00001 1 215 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 84.722 1.85e-128 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun542g00001 K02885 - cave:132172726 368.622