Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun5399g00002 ATGTGGATTCGAACAAAAAGTAATGGATCTAAGAAAATCAAAACAACCAGTGCATCTTCGCAGAGCACCATTCTAACGAGCTTGCTTGAATTTGCTTCTAACAATGATTTTGAAGAATTTAAGGTAGCTATAGCTAGCAATGTCTCTCTAATAAATGAAGTTGGCTTCTGGTATGCCCATCAAAAGGGATCTAAACAAATTGTTCTTGAGCACAGAACCCCTTTAATGGTGGCTGCATCCTATGGAAGCATTGATATTCTTAAGCTTGTACTCTCATGTCCAGAGGCTGATGTAAATTTTGCTTGCGTTCAACCCCAATCTCACAATCTCGCGTTGAAACCACGACTAGCAGTAGCGCGTGAAACAAAACCACCTAGGCGGGCCAAACGACCAAAGGAAAGCAAGTCTGTTTCACCCAACAAGAAGACTCCAAAAACTTCTAGAAAGGACTTGGCACTAAATCAAGTTGCATACGATGATTCAACCATGCCAGCACCAGTGTGCTCTTGTACCGGCGTTCTGAGACAGTGCTACAAATGGGGTAATGGAGGTGGGCAATCTGCTTGTTGTACAACCACTTTATCGGTGTATCCACTTCCAGTAGTGCCCAACAAAAGGCATGCACGAGTAGGCGGTAGGAAAATGAGTGGAAGTGCTTTTAATAAATTGCTTAGCCGGCTTGCAGTAGAGAACCAACGACGACGACTGCACAGTCTGCCGTCGAAGCCATATCTGCGCTTAACACCAACCTAA 753 0.4409 MWIRTKSNGSKKIKTTSASSQSTILTSLLEFASNNDFEEFKVAIASNVSLINEVGFWYAHQKGSKQIVLEHRTPLMVAASYGSIDILKLVLSCPEADVNFACVQPQSHNLALKPRLAVARETKPPRRAKRPKESKSVSPNKKTPKTSRKDLALNQVAYDDSTMPAPVCSCTGVLRQCYKWGNGGGQSACCTTTLSVYPLPVVPNKRHARVGGRKMSGSAFNKLLSRLAVENQRRRLHSLPSKPYLRLTPT 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun5399g00002 250 MobiDBLite consensus disorder prediction 119 148 - -
Vifaun5399g00002 250 SUPERFAMILY Ankyrin repeat 25 100 IPR036770 -
Vifaun5399g00002 250 MobiDBLite consensus disorder prediction 117 152 - -
Vifaun5399g00002 250 Pfam GAGA binding protein-like family 119 231 IPR010409 -
Vifaun5399g00002 250 Gene3D - 3 112 IPR036770 -
Vifaun5399g00002 250 PANTHER - 118 232 IPR010409 -
Vifaun5399g00002 250 SMART GAGA_bind_2 52 233 IPR010409 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun5399g00002 134 232 BBR or BPC Transcription factor family AT5G42520 72.727 1.81e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Vifaun5399g00002 GAGA_bind 3.6e-52 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun5399g00002 - - tpra:123887069 192.2