Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun5399g00001 ATGTTTGCCAATGACAAAGCACTTGAATGGAAGAATAGTCAGGAAATTATAAACGAAAGTGATGATCTTAACAAGCAGTTAGTGGTCTCAAAGGCTGATTGGAAACCCCAGGACTTGGCACTAAATCATGTTGCATACGATGATTCAACCATGCCAGCACCAGTGTGCTCTTGTACCGGCGTTCTGAGACAGTGCTACAAATGGGGTAATGGAGGTTGGCAATCTGCTTGTTGTACAACCACTTTATCGGTGTATCCACTTCCAGTAGTGCCCAACAAAAGGCATGCACGAGTAGGCGGTAGGAAAATGAGTGGAAGTGCTTTTAATAAATTGCTTAGCCGGCTTGCAGTAGAGAACCAACAACGACGACTGCACAGTCCTCCGTCGAAGCCAGATCTGCGCTTAACACCAACCTAA 417 0.4556 MFANDKALEWKNSQEIINESDDLNKQLVVSKADWKPQDLALNHVAYDDSTMPAPVCSCTGVLRQCYKWGNGGWQSACCTTTLSVYPLPVVPNKRHARVGGRKMSGSAFNKLLSRLAVENQQRRLHSPPSKPDLRLTPT 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun5399g00001 138 MobiDBLite consensus disorder prediction 119 138 - -
Vifaun5399g00001 138 PANTHER - 11 120 IPR010409 -
Vifaun5399g00001 138 Pfam GAGA binding protein-like family 13 120 IPR010409 -
Vifaun5399g00001 138 SMART GAGA_bind_2 1 122 IPR010409 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun5399g00001 11 121 BBR or BPC Transcription factor family AT5G42520 64.122 2.88e-54 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Vifaun5399g00001 GAGA_bind 4.4e-57 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun5399g00001 - - tpra:123887069 231.106