Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun5392g00001 ATGGATCTTCCAGAAACCTCACTCTGGTGGACTCAACAGCATCAGCATCAGCATCAACAACAACAACCTATGATGTTACTAGAACCAATCCAAAACCATTCGTGGCCACTCCACCACCAGCAACCACCATGGTTCACTTCACAAATCAACGAAAACAACGAAACCCAAGATGAAGAAGAACAAGAAAACGACACCCGCGTTGTAAAGCTAGGCTCAGACGAAAAAGAAGCAATGTTCGAGAAACCATTAACGCCGAGCGACGTAGGAAAACTGAACCGTCTTGTGATCCCAAAGCAATACGCGGAAAGATACTTCCCACTCGGCGGCGGCGGCGGCGAGTCGAGCGAGTGCAAGGGCTTGTTACTGAGTTTCGAGGACGAGTCAGGGAAGTGTTGGCGGTTCCGTTACTCGTATTGGAACAGTAGTCAAAGCTACGTGTTGACTAAGGGTTGGAGTCGTTATGTGAAAGATAAGCGTCTTGATGCAGGCGACGTCGTTTTGTTCGAACGACATCGTGTCGATAGTCAGAGGCTTTTTATCAACTGGAGGAGGAGGAATGGGAATGATGAGTCAGCGTATGTTAGCAGAGGGGTGGGACAACATGGGAAGGGGGGTGATAAGAATGAAGTTGTGGGCGTTGGTGTTGGGTGGTCCAGAGGATTCTATTCTGCGCACTTGCCTTATCCTGCGCATCATCTTCATCATCATCAGCTTTTGCCATACCAACATGATCACTGTCTTCATGCAGGTAGAGTGTCCCAAGGACAGAACCAAAGGACGAAACCGGTAGGAAACAGTTCAAGTTCAAGGGTACTTAGGTTGTTTGGTGTTAACATGGAATGCCAACCTGAACATGAACATGAACATGATTCTTCATCAACACCTCAATGTTCTTATGATAGTAATAACAATAATAATAATATGCCATTAACACAGTATCATCAACCTAATCCTTCTAATTCTAACCCTCACGTGGTACGTCACCAACCATATTATTACTAG 1002 0.4591 MDLPETSLWWTQQHQHQHQQQQPMMLLEPIQNHSWPLHHQQPPWFTSQINENNETQDEEEQENDTRVVKLGSDEKEAMFEKPLTPSDVGKLNRLVIPKQYAERYFPLGGGGGESSECKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFERHRVDSQRLFINWRRRNGNDESAYVSRGVGQHGKGGDKNEVVGVGVGWSRGFYSAHLPYPAHHLHHHQLLPYQHDHCLHAGRVSQGQNQRTKPVGNSSSSRVLRLFGVNMECQPEHEHEHDSSSTPQCSYDSNNNNNNMPLTQYHQPNPSNSNPHVVRHQPYYY 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun5392g00001 333 MobiDBLite consensus disorder prediction 294 326 - -
Vifaun5392g00001 333 CDD B3_DNA 78 176 IPR003340 GO:0003677
Vifaun5392g00001 333 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 14 294 IPR044800 GO:0003700
Vifaun5392g00001 333 MobiDBLite consensus disorder prediction 1 22 - -
Vifaun5392g00001 333 MobiDBLite consensus disorder prediction 282 333 - -
Vifaun5392g00001 333 Pfam B3 DNA binding domain 79 186 IPR003340 GO:0003677
Vifaun5392g00001 333 SMART B3_2 79 186 IPR003340 GO:0003677
Vifaun5392g00001 333 Gene3D - 73 194 IPR015300 -
Vifaun5392g00001 333 ProSiteProfiles B3 DNA-binding domain profile. 79 186 IPR003340 GO:0003677
Vifaun5392g00001 333 SUPERFAMILY DNA-binding pseudobarrel domain 75 186 IPR015300 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun5392g00001 70 297 RAV Transcription Factor Family AT5G06250 49.362 8.32e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vifaun5392g00001 B3 4.5e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun5392g00001 K09287 - gmx:100795470 347.436