Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun5359g00003 ATGGCTCCTCCTTCAGATATCAACCATCTCTCAAACCCTTGCATTTATGGGGATTTTTCTTCTTCATACTCAGAGAGGAAGTCTGGTTTTATGAAATGGTTTGGTAAGATTTTCAAAATTGGTTCTAATCGAGGAAAAGGCGGTAGTCATCATCTGCAGCAACCGGCAGAGGAAAACATGGCTTGGCGAGCGCCACCTAGATCGTTGGATAACCATGCTAGAACGAAGAAAGAGGATGAGGATTTGAGCAATGCAATTGCACTTTCTTTAAATGAAGATTTAAAGATACCAGCAGGATATAGATGGAGAACGGGAGCTAATGATGATTATGCAAAGGGACTTCAGGATCGTATGCATTCGTCTCTACACCCTCCATATGCCCCTTTACCGTATTATCCCCGGGGATACAGATTATGTGGAGGGTGCAATAAGGAGATACTCTATGGGAATTGTTTGGGAGTCGAACAGAGTTATTTTCATCCAGATTGCTTTCGGTGTCACTCTTGCCATCATCCTATTACCGAGCGTGAGTTTTCTTTGTCAGGGAAGCATCCATATCACAAATATTGTTTTAAAGAGTTAAGCCATCCTAAATGTGAAGTTTGTCATCATTATATACCTATAAATGGTTCTCGTTTGATTGAGTATAGGTGTCACCCTTATTGGAACCAAAAGTACTGTCCATCTCATGAATATGACAATACTGCTCGCTGTTGTAGCTGCGAAAGATTAGAGTCTCGTGGAGAGAGATACTTTAGATTGGATGATGGACGGATTATGTGCTTTGAGTGCATGGAATCTGCTATAACAGATACCGGTGAATGTCAACCTCTTTATCATGCTATTCGAGACTATTATGAAGGAATGCATATGAGAATTGATCAACAAATCCCGATGCTTCTAGTTGGGAGAGAAGCACTTAATGAAGCCATTGTTGGAGAAAAGAATGTTTACCATCATGTTCCGGAAACAAGAGGCTTATGCCTTTCAGAAGAGCAAATTGTCACCAGTGTACTGAGTGTTCTTTCTTGGTCTCAAATTTAA 1044 0.4071 MAPPSDINHLSNPCIYGDFSSSYSERKSGFMKWFGKIFKIGSNRGKGGSHHLQQPAEENMAWRAPPRSLDNHARTKKEDEDLSNAIALSLNEDLKIPAGYRWRTGANDDYAKGLQDRMHSSLHPPYAPLPYYPRGYRLCGGCNKEILYGNCLGVEQSYFHPDCFRCHSCHHPITEREFSLSGKHPYHKYCFKELSHPKCEVCHHYIPINGSRLIEYRCHPYWNQKYCPSHEYDNTARCCSCERLESRGERYFRLDDGRIMCFECMESAITDTGECQPLYHAIRDYYEGMHMRIDQQIPMLLVGREALNEAIVGEKNVYHHVPETRGLCLSEEQIVTSVLSVLSWSQI 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun5359g00003 347 ProSiteProfiles LIM domain profile. 137 197 IPR001781 -
Vifaun5359g00003 347 Pfam Protein DA1 288 339 IPR022087 -
Vifaun5359g00003 347 ProSitePatterns LIM zinc-binding domain signature. 139 173 IPR001781 -
Vifaun5359g00003 347 Gene3D Cysteine Rich Protein 135 197 - -
Vifaun5359g00003 347 CDD LIM 166 230 - -
Vifaun5359g00003 347 MobiDBLite consensus disorder prediction 45 65 - -
Vifaun5359g00003 347 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 131 164 - -
Vifaun5359g00003 347 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 165 228 - -
Vifaun5359g00003 347 PANTHER PROTEIN DA1-RELATED 2 33 339 IPR045218 -
Vifaun5359g00003 347 SMART lim_4 138 190 IPR001781 -
Vifaun5359g00003 347 CDD LIM_DA1 139 191 - -
Vifaun5359g00003 347 Pfam LIM domain 139 192 IPR001781 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifaun5359g00003 DA1-like 1.7e-17 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun5359g00003 - - gmx:100793901 610.912