Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun5359g00002 ATGGCTCCTCCTTCAGATATCAACCATCTCTCAAACCCTTGCATTTATGGGGATTTTTCTTCTTCATACTCAGAGAGGAAGTCTGGTTTTATGAAATGGTTTGGTAAGATTTTCAAAATTGGTTCTAATCGAGGAAAAGGCGGTAGTCATCATCTGCAGCAACCGGCAGAGGAAAACATGGCTTGGCGAGCGCCACCTAGATCGTTGGATAACCATGCTAGAACGAAGAAAGAGGATGAGGATTTGAGCAATGCAATTGCACTTTCTTTAAATGAAGATTTAAAGATACCAGCAGGATATAGATGGAGAACGGGAGCTAATGATGATTATGCAAAGGGACTTCAGGATCGTATGCATTCGTCTCTACACCCTCCATATGCCCCTTTACCGTATTATCCCCGGGGATACAGCATGCCATCGCATACTAGATTATGTGGAGGGTGCAATAAGGAGATACTCTATGGGAATTGTTTGGGAGTCGAACAGAGTTATTTTCATCCAGATTGCTTTCGGTGTCACTCTTGCCATCATCCTATTACCGAGCGTGAGTTTTCTTTGTCAGGGAAGCATCCATATCACAAATATTGTTTTAAAGAGTTAAGCCATCCTAAATGTGAAGTTTGTCATCATTATATACCTATAAATGGTTCTCGTTTGATTGAGTATAGGTGTCACCCTTATTGGAACCAAAAGTACTGTCCATCTCATGAATATGACAATACTGCTCGCTGTTGTAGCTGCGAAAGATTAGAGTCTCGTGGAGAGAGATACTTTAGATTGGATGATGGACGGATTATGTGCTTTGAGTGCATGGAATCTGCTATAACAGATACCGGTGAATGTCAACCTCTTTATCATGCTATTCGAGACTATTATGAAGGAATGCATATGAGAATTGATCAACAAATCCCGATGCTTCTAGTTGGGAGAGAAGCACTTAATGAAGCCATTGTTGGAGAAAAGAATGTTTACCATCATGTTCCGGAAACAAGAGGCTTATGCCTTTCAGAAGAGCAAATTGTCACCAGTGTACTGAGTGTTCTTTCTTGGTCTCAAATTTAA 1062 0.4087 MAPPSDINHLSNPCIYGDFSSSYSERKSGFMKWFGKIFKIGSNRGKGGSHHLQQPAEENMAWRAPPRSLDNHARTKKEDEDLSNAIALSLNEDLKIPAGYRWRTGANDDYAKGLQDRMHSSLHPPYAPLPYYPRGYSMPSHTRLCGGCNKEILYGNCLGVEQSYFHPDCFRCHSCHHPITEREFSLSGKHPYHKYCFKELSHPKCEVCHHYIPINGSRLIEYRCHPYWNQKYCPSHEYDNTARCCSCERLESRGERYFRLDDGRIMCFECMESAITDTGECQPLYHAIRDYYEGMHMRIDQQIPMLLVGREALNEAIVGEKNVYHHVPETRGLCLSEEQIVTSVLSVLSWSQI 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun5359g00002 353 ProSitePatterns LIM zinc-binding domain signature. 145 179 IPR001781 -
Vifaun5359g00002 353 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 171 234 - -
Vifaun5359g00002 353 Gene3D Cysteine Rich Protein 139 202 - -
Vifaun5359g00002 353 ProSiteProfiles LIM domain profile. 143 203 IPR001781 -
Vifaun5359g00002 353 Pfam LIM domain 145 198 IPR001781 -
Vifaun5359g00002 353 CDD LIM 172 236 - -
Vifaun5359g00002 353 SMART lim_4 144 196 IPR001781 -
Vifaun5359g00002 353 Pfam Protein DA1 294 345 IPR022087 -
Vifaun5359g00002 353 CDD LIM_DA1 145 197 - -
Vifaun5359g00002 353 MobiDBLite consensus disorder prediction 44 65 - -
Vifaun5359g00002 353 PANTHER PROTEIN DA1-RELATED 2 33 345 IPR045218 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifaun5359g00002 DA1-like 1.8e-17 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun5359g00002 - - gmx:100793901 622.854