Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun5359g00001 ATGGCTCCTCCTTCAGATATCAACCATCTCTCAAACCCTTGCATTTATGCAGGGGATTTTTCTTCTTCATACTCAGAGAGGAAGTCTGGTTTTATGAAATGGTTTGGTAAGATTTTCAAAATTGGTTCTAATCGAGGAAAAGGCGGTAGTCATCATCTGCAGCAACCGGCAGAGGAAAACATGGCTTGGCGAGCGCCACCTAGATCGTTGGATAACCATGCTAGAACGAAGAAAGAGGATGAGGATTTGAGCAATGCAATTGCACTTTCTTTAAATGAAGATTTAAAGATACCAGCAGGATATAGATGGAGAACGGGAGCTAATGATGATTATGCAAAGGGACTTCAGGATCGTATGCATTCGTCTCTACACCCTCCATATGCCCCTTTACCGTATTATCCCCGGGGATACAGCATGCCATCGCATACTAGATTATGTGGAGGGTGCAATAAGGAGATACTCTATGGGAATTGTTTGGGAGTCGAACAGAGTTATTTTCATCCAGATTGCTTTCGGTGTCACTCTTGCCATCATCCTATTACCGAGCGTGAGTTTTCTTTGTCAGGGAAGCATCCATATCACAAATATTGTTTTAAAGAGTTAAGCCATCCTAAATGTGAAGTTTGTCATCATTATATACCTATAAATGGTTCTCGTTTGATTGAGTATAGGTGTCACCCTTATTGGAACCAAAAGTACTGTCCATCTCATGAATATGACAATACTGCTCGCTGTTGTAGCTGCGAAAGATTAGAGTCTCGTGGAGAGAGATACTTTAGATTGGATGATGGACGGATTATGTGCTTTGAGTGCATGGAATCTGCTATAACAGATACCGGTGAATGTCAACCTCTTTATCATGCTATTCGAGACTATTATGAAGGAATGCATATGAGAATTGATCAACAAATCCCGATGCTTCTAGTTGGGAGAGAAGCACTTAATGAAGCCATTGTTGGAGAAAAGAATGTTTACCATCATGTTCCGGAAACAAGAGGCTTATGCCTTTCAGAAGAGCAAATTGTCACCAGTGTACTGAGTGTTCTTTCTTGGTCTCAAATTTAA 1065 0.4094 MAPPSDINHLSNPCIYAGDFSSSYSERKSGFMKWFGKIFKIGSNRGKGGSHHLQQPAEENMAWRAPPRSLDNHARTKKEDEDLSNAIALSLNEDLKIPAGYRWRTGANDDYAKGLQDRMHSSLHPPYAPLPYYPRGYSMPSHTRLCGGCNKEILYGNCLGVEQSYFHPDCFRCHSCHHPITEREFSLSGKHPYHKYCFKELSHPKCEVCHHYIPINGSRLIEYRCHPYWNQKYCPSHEYDNTARCCSCERLESRGERYFRLDDGRIMCFECMESAITDTGECQPLYHAIRDYYEGMHMRIDQQIPMLLVGREALNEAIVGEKNVYHHVPETRGLCLSEEQIVTSVLSVLSWSQI 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun5359g00001 354 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 172 235 - -
Vifaun5359g00001 354 CDD LIM_DA1 146 198 - -
Vifaun5359g00001 354 MobiDBLite consensus disorder prediction 45 66 - -
Vifaun5359g00001 354 ProSitePatterns LIM zinc-binding domain signature. 146 180 IPR001781 -
Vifaun5359g00001 354 Gene3D Cysteine Rich Protein 140 203 - -
Vifaun5359g00001 354 PANTHER PROTEIN DA1-RELATED 2 34 346 IPR045218 -
Vifaun5359g00001 354 SMART lim_4 145 197 IPR001781 -
Vifaun5359g00001 354 Pfam Protein DA1 295 346 IPR022087 -
Vifaun5359g00001 354 Pfam LIM domain 146 199 IPR001781 -
Vifaun5359g00001 354 CDD LIM 173 237 - -
Vifaun5359g00001 354 ProSiteProfiles LIM domain profile. 144 204 IPR001781 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifaun5359g00001 DA1-like 1.8e-17 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun5359g00001 - - gmx:100793901 618.231