LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifaun5280g00001	ATGGGAGAGGTAGCGCGTGGAGGTTGTTGTCCTCCGATGGATCTGTTCCGTTCGGAGCCGATGCAACTGATTCAGCTCATCATTCCCATCGAATCCGCTCACTGCACTGTTTCATACCTCGGTGACCTTGGCCTTCTTCAGTTTAAAGATCTCAATTCAGAGAAGAGCCCCTTTCAACGAACTTATGCAACTCAGATAAAAAGATGTGGAGAGATGGCTCGTAGATTGCGTTTCTTCAAGGAGCAAATGTTTAAGGCAGGTGTTTCACCAAAAGGTTCCACAGCACAGTTTGATGTGAACATCGATGACCTTGAGATAAAACTTTCAGAAATTGAGTCTGAGTTAACTGAGATGAATGCAAATGGTGAAAAGTTGCAACGCACATACAATGAACTTGTTGAGTATAAGCTTGTTCTGCAGAAGGCTGGTGACTTTTTCCACTCAGCTCAAAGCCGTGCCATAGAGCAGCAAAGAGAATATGAATCACGCCATCTGAGTGGAGATTCTATGGAAGCACCTTTATTACAAGACCAAGAGTTACCAGGTGATTCATCAAAGGCAGTTAAGTTGGGATTTTTAGCTGGTCTCGTTCCCAGGGAAAAGTCCATGGCATTTGAGAGAATTTTATTTCGTGCTACTAGAGGCAATGTATTTTTGAGGCAGACTGCTGTTGAGGATCCGGTTACAGACCCTGTTTCTGGAGAAAAGACTGAGAAAAATGTTTTTGTCGTCTTTTACGCCGGTGAAAAAGTGAAAGCCAAGATTCTGAAAATCTGTGATGCCTTTGGTGCCAATCGATACCCGTTTGCTGAGGAACTTGGAAAACAAGCTCAAATGATTACAGAGGTTTCTGGAAGGCTTACGGAATTGAAGACCACCATAGATGCTGGACTTTTGCACCGAGTTAACTTGCTGGAAAATCTTGGGACTCAATTCGAGCAATGGAATCTTTTGGTGAGGAAGGAGAAATCCATCCACCATACCCTGAACATGCTGAGCCTTGATGTGACGAAAAAATGTCTAGTGGCTGAGGGGTGGAGTCCCGTTTTTGCAACAAAGCAGGTCCAAGATGCATTACAGCGGGCTTCAAAGGACTCTAACTCCCAAGTCAGTGCTATTTTGCAAGTTTTGCATACCAGAGAGTTGCCACCTACCTACTTTCGCACGAACAAATTTACGTCTTCGTATCAAGGAATTATAGACTCATATGGGGTTGCTAAATATCAAGAGGCAAATCCTACTGTGTTTACTGTAGTTACCTTTCCATTTCTTTTTGCTGTAATGTTTGGTGATTGGGGGCATGGAATATGTTTACTACTGGCAGCTCTATATTTCATAATCAGGGAGAAGAAACTTTCTAGCCAGAAGCTTGATGACATCACGGATATGACTTTTGGGGGTCGCTATGTTATTTTCATGATGTCACTCTTCTCGATCTACACTGGCCTAATCTATAACGAGTTCTTTTCTGTTCCATTTGAACTCTTTGGCGCCTCTGCATATGAGTGCCGTGACCTTTCGTGCAGGGATTCTACCACAATAGGGCTGATAAAAGCGCGTCGCACTTACCCTTTTGGAGTGGATCCTGTATGGCATGGTACACGTAGTGAATTACCATTCCTAAACTCTTTGAAAATGAAGATGTCAATTCTTCTTGGAGTTGCTCAAATGAACCTTGGAATTATAATGAGCTATGCCAATGCCAGGTTCTTTAAGAACCATGTAAATGTATGGTTCCAATTTATCCCCCAGGTGATATTTCTTAACAGTCTATTTGGCTACCTATCCCTCCTTATTATTGTGAAGTGGTGCACGGGTTCTCAAGCTGATTTGTACCACGTAATGATCTACATGTTCCTGAGCCCAACAGATGATTTAGGCGAGAACCAACTCTTTGAGGGTCAGAAAAATGTTCAGCTCGTGCTTCTGCTTCTGGCTGGTGTCGCTGTGCCCTGGATGCTGTTGCCAAAACCCTTTATTTTGAAGAAACAACATGAAGCTAGGCACATGGATGAATCCTATGCATCACTTCCAAACACGGAGGAAAGCTTGCAAGTGGAATCAAATCATGATTCCCATGGTCATGCGGAATTTGAGTTCAGTGAAATTTTTGTACATCAACTCATACACACTATAGAATTTGTACTTGGAGCAGTATCTAATACAGCTTCTTACCTTCGTCTGTGGGCCCTTAGTCTTGCTCATTCAGAGTTATCAACTGTATTCTACGAGAAGGTTCTGCTTATGGCATGGGGGTACAATAATTGGATTATCCTGATAGTGGGTCTCCTTGTTTTCATTTTTGCAACTGTTGGAGTGTTACTTGTCATGGAAACTCTGAGTGCCTTCTTGCACGCATTGAGGCTTCACTGGGTGGAGTACCAAAACAAGTTTTACGAAGGAGATGGTTACAAGTTCCACCCTTTCTCGTTCACATTGCTAGACGAAGAGGATGAGTTGATATAA	2466	0.429	MGEVARGGCCPPMDLFRSEPMQLIQLIIPIESAHCTVSYLGDLGLLQFKDLNSEKSPFQRTYATQIKRCGEMARRLRFFKEQMFKAGVSPKGSTAQFDVNIDDLEIKLSEIESELTEMNANGEKLQRTYNELVEYKLVLQKAGDFFHSAQSRAIEQQREYESRHLSGDSMEAPLLQDQELPGDSSKAVKLGFLAGLVPREKSMAFERILFRATRGNVFLRQTAVEDPVTDPVSGEKTEKNVFVVFYAGEKVKAKILKICDAFGANRYPFAEELGKQAQMITEVSGRLTELKTTIDAGLLHRVNLLENLGTQFEQWNLLVRKEKSIHHTLNMLSLDVTKKCLVAEGWSPVFATKQVQDALQRASKDSNSQVSAILQVLHTRELPPTYFRTNKFTSSYQGIIDSYGVAKYQEANPTVFTVVTFPFLFAVMFGDWGHGICLLLAALYFIIREKKLSSQKLDDITDMTFGGRYVIFMMSLFSIYTGLIYNEFFSVPFELFGASAYECRDLSCRDSTTIGLIKARRTYPFGVDPVWHGTRSELPFLNSLKMKMSILLGVAQMNLGIIMSYANARFFKNHVNVWFQFIPQVIFLNSLFGYLSLLIIVKWCTGSQADLYHVMIYMFLSPTDDLGENQLFEGQKNVQLVLLLLAGVAVPWMLLPKPFILKKQHEARHMDESYASLPNTEESLQVESNHDSHGHAEFEFSEIFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEKVLLMAWGYNNWIILIVGLLVFIFATVGVLLVMETLSAFLHALRLHWVEYQNKFYEGDGYKFHPFSFTLLDEEDELI	821

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifaun5280g00001	821	PANTHER	VACUOLAR PROTON ATPASES	15	817	IPR002490	GO:0033179\|GO:0046961\|GO:1902600
	Vifaun5280g00001	821	Coils	Coil	101	128	-	-
	Vifaun5280g00001	821	PIRSF	ATP6V0A1	11	820	IPR026028	GO:0000220\|GO:0046961
	Vifaun5280g00001	821	Pfam	V-type ATPase 116kDa subunit family	39	811	IPR002490	GO:0033179\|GO:0046961\|GO:1902600

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifaun5280g00001	13	819	Primary Pumps ATPases(2)	AT2G21410	77.723	0.0	1310

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifaun5280g00001	K02154		-	gmx:100810062	1426.38