Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun5254g00002 ATGGAAGCTAAAGCGAATGAAGAAGAAGAAGCATGCATCAACAATAGTTGCTCCATCAACAACACCAAATTTGAATTAGAAATTAAAGAAGAAGCTGATGGTGTTGTTGAAGATGAAGCTAGTGACATGGTTGCTTGTCAACTTGAAGGGCTAAAATTTTCAGATCCGAGTGTTTTGAAATTGCCCGAGCCACCTGTTGCTTATGCAGAGAATCCAATTGGGATTGATCTCAATTTTAGTTTTAGATTTGATTTTGATCGATTTAACATCGATGATTTTGGACAGGATTTCGATTACACTGAGATTCGCACTTGCCGAAATGTAGAAATTCCATACCCTTTTGTGATATACAAAAACCTCAAGAGTTGTTCACCAGATCCAAGATTAATTAAGCTCAAGTGCAATGATAAAGACGGACTTGTTAAGGGTAACGTACCAGTAGGAAACATAAACATCTCCACATCTCAAATTGAACTGTCGTTAATTGTCTCCAAGTATTGCGGCAAGAATAATAGTAATAACCCATCGCTTACCTCGAAGTCTTTTACCATTTCAAGCAAAGATAACAAGTTACTAACTGTTGGTGATAACAGTTACGGTTATCTTAACAGTTTCGGTGATGATGGCAGTAAGTACTCAACAGGGTGCTTAACAAGATCTTTTGGTGATCCAAGATCGATTGATCATGGAACATGTTCGGGTATTGGGTGTTGCCAAGTTGATATTCCCCCTCGAATGAGGAATATAACTATAGAAGCTTCTAGTTTTGACGAATTACCAAAATCTTGTAGCTATGCATTTGTTGTCAAGAATGGTAACTATACTTTTTCTTCCACTCATTTATCTCAAGGCTTACCTGATGACTTACCTGTGATTTTTGACTGGACCATTGACTTTGCCAATAACTGCACTTCTGCCAAGAATAATGGAGTCAATTATGGGTGCAAGAACAATAGTAAATGTGATGATGAGGACACAGATTATGGTTATCGATGCATATGCAATCCAGGCTATGAAGGAAATCCTTATCATCCCATTGGCTGCAGAGACATTAATGAATGTGAAAATGACACACATGAATGCAAAACCAAAGCAAATTGTAAGAACATTGATGGGAGTCACACATGTTTCTGTCCAAAGTGGGGGTCTTCTGGAGATGGAACAAAGAAAGGAGGGTGCCAAAATTTACCAAATATTGTTCTTGGAGTAGGAGCAGCATTTATTCTTCTATTTGCTGGGACATTTTCATACTTAATATACCATAAGAGGAAATTCATCAAATTGAAAGAGAAACTGTTTGAACAGAATGGTGGTTTATTTTTGAGACAAAAACTGTCTGGAAAAGAATATTCATCCTCTCAAAGTACTCAAATATTCACACAGGATGAACTAAAGAAGGCAACCAAAAACTTTGACGAGAGTTTAATTGTAGGCAGAGGTGGTTTTGGTACTGTTTTCAAAGGATTTCTAGATGACAAAAGAATTGTTGCTATCAAGAAGTCGAAACAAATAAATAAAAACCAAATTCAGCAATTCATTGATGAGGTGGTTGTTCTGTCTCAAATAAATCATAAGAATGTAGTCAAACTTTTGGGGTGTTGTTTAGAGACAAAAGTTCCTCTCTTGGTTTATGAATTTGTTTCCAATGGTACCCTATCTAATTTTATACACAAAGAACGACAAGTGAATAATGAAACCTGGAAAACTCGTCTTAAGATAGCAGCAGAGGTAGCCGGAGCTTTGTCATATCTACATTCTGGTGTCACAATACCCATTATCCACAGTGATGTCAAAAGTGATAACGTTCTCTTGGATGGAACCAACATTACTGCTAGAGTATCTGATTTTGGAGCTTCAAAATTGGTTCCACTTGATCAAACTGAAGTAGCGACAATAGTGCAAGGAACTTTTGGCTACTTAGATCCAGAGTATATGCAAACAAGCCAATTGACTGATAAAAGTGATGTCTATAGCTTTGGAGTAGTTCTTGTGGAGCTGCTAACAGGGGAGAAACCTTTTTGTTTTGGTGGGCAAGAAAATAGTAGAAGCCTTGCTATGCACTTTTTATCTTATTTGAAAAAGGATAGGGTGTTTGAAGTTATTCAAAATGGTATGCGGAATGAAGGAAATGAACAAGAGATCAAGGAGGTTGCTGTTCTTGCGTCACAGTGTTTGAGACTAAGAGGGGAGAAAAGACCTAGCATGAAGGAAGTGGCTATGAAATTGGAAGGAATGACGATATTGGATAAGCGATCTCCGGTCGATGATGACATAAATATAGAGGAGACTCAGTACTTACTTTATGAATCATCATCATCTAGCATTCATGAACTTGGTGATACCAGCAAACATGGAGATGTCGGGTATGACAGCTTGAAAGAATGTAAATTGATTGTCTTCGATGATGGAAGATGA 2415 0.3739 MEAKANEEEEACINNSCSINNTKFELEIKEEADGVVEDEASDMVACQLEGLKFSDPSVLKLPEPPVAYAENPIGIDLNFSFRFDFDRFNIDDFGQDFDYTEIRTCRNVEIPYPFVIYKNLKSCSPDPRLIKLKCNDKDGLVKGNVPVGNINISTSQIELSLIVSKYCGKNNSNNPSLTSKSFTISSKDNKLLTVGDNSYGYLNSFGDDGSKYSTGCLTRSFGDPRSIDHGTCSGIGCCQVDIPPRMRNITIEASSFDELPKSCSYAFVVKNGNYTFSSTHLSQGLPDDLPVIFDWTIDFANNCTSAKNNGVNYGCKNNSKCDDEDTDYGYRCICNPGYEGNPYHPIGCRDINECENDTHECKTKANCKNIDGSHTCFCPKWGSSGDGTKKGGCQNLPNIVLGVGAAFILLFAGTFSYLIYHKRKFIKLKEKLFEQNGGLFLRQKLSGKEYSSSQSTQIFTQDELKKATKNFDESLIVGRGGFGTVFKGFLDDKRIVAIKKSKQINKNQIQQFIDEVVVLSQINHKNVVKLLGCCLETKVPLLVYEFVSNGTLSNFIHKERQVNNETWKTRLKIAAEVAGALSYLHSGVTIPIIHSDVKSDNVLLDGTNITARVSDFGASKLVPLDQTEVATIVQGTFGYLDPEYMQTSQLTDKSDVYSFGVVLVELLTGEKPFCFGGQENSRSLAMHFLSYLKKDRVFEVIQNGMRNEGNEQEIKEVAVLASQCLRLRGEKRPSMKEVAMKLEGMTILDKRSPVDDDINIEETQYLLYESSSSSIHELGDTSKHGDVGYDSLKECKLIVFDDGR 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun5254g00002 804 Gene3D Transferase(Phosphotransferase) domain 1 547 763 - -
Vifaun5254g00002 804 SMART serkin_6 471 746 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifaun5254g00002 804 Gene3D Laminin 300 391 - -
Vifaun5254g00002 804 SMART egf_5 302 349 IPR000742 -
Vifaun5254g00002 804 SMART egf_5 353 394 IPR000742 -
Vifaun5254g00002 804 SUPERFAMILY Protein kinase-like (PK-like) 451 743 IPR011009 -
Vifaun5254g00002 804 FunFam Fibrillin 2 345 390 - -
Vifaun5254g00002 804 FunFam Wall-associated receptor kinase 2 547 765 - -
Vifaun5254g00002 804 ProSiteProfiles EGF-like domain profile. 350 389 IPR000742 -
Vifaun5254g00002 804 ProSitePatterns Serine/Threonine protein kinases active-site signature. 592 604 IPR008271 GO:0004672|GO:0006468
Vifaun5254g00002 804 FunFam Wall-associated receptor kinase 2 440 546 - -
Vifaun5254g00002 804 Gene3D Phosphorylase Kinase; domain 1 442 546 - -
Vifaun5254g00002 804 CDD EGF 312 343 - -
Vifaun5254g00002 804 ProSiteProfiles Protein kinase domain profile. 471 748 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifaun5254g00002 804 SMART egfca_6 350 394 IPR001881 GO:0005509
Vifaun5254g00002 804 Pfam Wall-associated kinase 231 335 IPR013695 GO:0004674|GO:0016020
Vifaun5254g00002 804 CDD EGF_CA 350 379 - -
Vifaun5254g00002 804 ProSitePatterns Protein kinases ATP-binding region signature. 477 500 IPR017441 GO:0005524
Vifaun5254g00002 804 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 95 746 IPR045274 GO:0007166
Vifaun5254g00002 804 Pfam Protein tyrosine and serine/threonine kinase 477 742 IPR001245 GO:0004672|GO:0006468
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun5254g00002 105 804 Receptor kinase-like Gene Family AT1G21230 42.127 1.79e-167 500
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vifaun5254g00002 PK_Tyr_Ser-Thr 1.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun5254g00002 - - mtr:25481909 915.99