Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun5254g00001 ATGAAAATGATGAAGCATGTGTTAATGGTTACTACATTAAGCATGGTGGTAGGAATCGTTGGCCTTGTAGCTGATTCACCACCAAATACCTGCACTGAGATTCGCACTTGCCGAAATGTAGAAATTCCATACCCTTTTGTGATATACAAAAACCTCAAGAGTTGTTCACCAGATCCAAGATTAATTAAGCTCAAGTGCAATGATAAAGACGGACTTGTTAAGGGTAACGTACCAGTATTAAGCATAAACATCTCCACATCTCAAATTGAACTGTCGTTAATTGTCTCCAAGTATTGCGGCAAGAATAATAGTAATAACCCATCGCTTACCTCCAAGTCTTTTACCATTTCAAGCAAAGATAACAAGTTCCTAACTGTTGGTGATAACAGTTACGGTTATCTTAACAGTTTCGGTGATGATGGCAGTAAGTACTCAACAGGGTGCTTAACAAGATCTTTTGGTGATTCAAGATCGATTGATCATGGAACATGTTCGGGTATTGGGTGTTGCCAAGTTGATATTCCCCCTCGAATGAGGAATATAACTATAGAAGCTTCTAGTTTTGACGAATTACCAAAATCTTGTAGCTATGCATTTGTTGTCAAGAATGGTAACTATACTTTTTCTTCCACTCATTTATCTCAAGGCTTACCTGATGACTTACCTGTGATTTTTGACTGGACCATTGACTTTGCCAATAACTGCACTTCTGCCAAGAATAATGGAGTCAATTATGGGTGCAAGAACAATAGTAAATGTGATGATGAGGACACAGATTATGGTTATCGATGCATATGCAATCCAGGCTATGAAGGAAATCCTTATCATCCCATTGGCTGCAGAGACATTAATGAATGTGAAAATGACACACATGAATGCAAAACCAAAGCAAATTGTAAGAACATTGATGGGAGTCACACATGTTTCTGTCCAAAGTGGGGGTCTTCTGGAGATGGAACAAAGAAAGGAGGGTGCCAAAATTTACCAAATATTGTTCTTGGAGTAGGAGCAGCATTTATTCTTCTATTTGCTGGGACATTTTCATACTTAATATACCATAAGAGGAAATTCATCAAATTGAAAGAGAAACTGTTTGAACAGAATGGTGGTTTATTTTTGAGACAAAAACTGTCTGGAAAAGAATATTCATCCTCTCAAAGTACTCAAATATTCACACAGGATGAACTAAAGAAGGCAACCAAAAACTTTGACGAGAGTTTAATTGTAGGCAGAGGTGGTTTTGGTACTGTTTTCAAAGGATTTCTAGATGACAAAAGAATTGTTGCTATCAAGAAGTCGAAACAAATAAATAAAAACCAAATTCAGCAATTCATTGATGAGGTGGTTGTTCTGTCTCAAATAAATCATAAGAATGTAGTCAAACTTTTGGGGTGTTGTTTAGAGACAAAAGTTCCTCTCTTGGTTTATGAATTTGTTTCCAATGGTACCCTATCTAATTTTATACACAAAGAACGACAAGTGAATAATGAAACCTGGAAAACTCGTCTTAAGATAGCAGCAGAGGTAGCCGGAGCTTTGTCATATCTACATTCTGGTGTCACAATACCCATTATCCACAGTGATGTCAAAAGTGATAACGTTCTCTTGGATGGAACCAACATTACTGCTAGAGTATCTGATTTTGGAGCTTCAAAATTGGTTCCACTTGATCAAACTGAAGTAGCGACAATAGTGCAAGGAACTTTTGGCTACTTAGATCCAGAGTATATGCAAACAAGCCAATTGACTGATAAAAGTGATGTCTATAGCTTTGGAGTAGTTCTTGTGGAGCTGCTAACAGGGGAGAAACCTTTTTGTTTTGGTGGGCAAGAAAATAGTAGAAGCCTTGCTATGCACTTTTTATCTTATTTGAAAAAGGATAGGGTGTTTGAAGTTATTCAAAATGGTATGCGGAATGAAGGAAATGAACAAGAGATCAAGGAGGTTGCTGTTCTTGCGTCACAGTGTTTGAGACTAAGAGGGGAGAAAAGACCTAGCATGAAGGAAGTGGCTATGAAATTGGAAGGAATGACGATATTGGATAAGCGATCTCCGGTCGATGATGACATAAATATAGAGGAGACTCAGTACTTACTTTATGAATCATCATCATCTAGCATTCATGAACTTGGTGATACCAGCAAACATGGAGATGTCGGGTATGACAGCTTGAAAGAATGTAAATTGATTGTCTTCGATGATGGAAGATGA 2211 0.3758 MKMMKHVLMVTTLSMVVGIVGLVADSPPNTCTEIRTCRNVEIPYPFVIYKNLKSCSPDPRLIKLKCNDKDGLVKGNVPVLSINISTSQIELSLIVSKYCGKNNSNNPSLTSKSFTISSKDNKFLTVGDNSYGYLNSFGDDGSKYSTGCLTRSFGDSRSIDHGTCSGIGCCQVDIPPRMRNITIEASSFDELPKSCSYAFVVKNGNYTFSSTHLSQGLPDDLPVIFDWTIDFANNCTSAKNNGVNYGCKNNSKCDDEDTDYGYRCICNPGYEGNPYHPIGCRDINECENDTHECKTKANCKNIDGSHTCFCPKWGSSGDGTKKGGCQNLPNIVLGVGAAFILLFAGTFSYLIYHKRKFIKLKEKLFEQNGGLFLRQKLSGKEYSSSQSTQIFTQDELKKATKNFDESLIVGRGGFGTVFKGFLDDKRIVAIKKSKQINKNQIQQFIDEVVVLSQINHKNVVKLLGCCLETKVPLLVYEFVSNGTLSNFIHKERQVNNETWKTRLKIAAEVAGALSYLHSGVTIPIIHSDVKSDNVLLDGTNITARVSDFGASKLVPLDQTEVATIVQGTFGYLDPEYMQTSQLTDKSDVYSFGVVLVELLTGEKPFCFGGQENSRSLAMHFLSYLKKDRVFEVIQNGMRNEGNEQEIKEVAVLASQCLRLRGEKRPSMKEVAMKLEGMTILDKRSPVDDDINIEETQYLLYESSSSSIHELGDTSKHGDVGYDSLKECKLIVFDDGR 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun5254g00001 736 Gene3D Phosphorylase Kinase; domain 1 374 478 - -
Vifaun5254g00001 736 FunFam Fibrillin 2 277 322 - -
Vifaun5254g00001 736 ProSiteProfiles Protein kinase domain profile. 403 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifaun5254g00001 736 SMART egf_5 234 281 IPR000742 -
Vifaun5254g00001 736 SMART egf_5 285 326 IPR000742 -
Vifaun5254g00001 736 Gene3D Laminin 232 323 - -
Vifaun5254g00001 736 SUPERFAMILY Protein kinase-like (PK-like) 383 675 IPR011009 -
Vifaun5254g00001 736 ProSitePatterns Serine/Threonine protein kinases active-site signature. 524 536 IPR008271 GO:0004672|GO:0006468
Vifaun5254g00001 736 SMART serkin_6 403 678 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifaun5254g00001 736 Pfam Protein tyrosine and serine/threonine kinase 409 674 IPR001245 GO:0004672|GO:0006468
Vifaun5254g00001 736 FunFam Wall-associated receptor kinase 2 479 697 - -
Vifaun5254g00001 736 FunFam Wall-associated receptor kinase 2 372 478 - -
Vifaun5254g00001 736 ProSiteProfiles EGF-like domain profile. 282 321 IPR000742 -
Vifaun5254g00001 736 CDD EGF_CA 282 311 - -
Vifaun5254g00001 736 ProSitePatterns Protein kinases ATP-binding region signature. 409 432 IPR017441 GO:0005524
Vifaun5254g00001 736 Pfam Wall-associated kinase 163 267 IPR013695 GO:0004674|GO:0016020
Vifaun5254g00001 736 Gene3D Transferase(Phosphotransferase) domain 1 479 695 - -
Vifaun5254g00001 736 SMART egfca_6 282 326 IPR001881 GO:0005509
Vifaun5254g00001 736 Pfam Wall-associated receptor kinase galacturonan-binding 31 91 IPR025287 GO:0030247
Vifaun5254g00001 736 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 26 678 IPR045274 GO:0007166
Vifaun5254g00001 736 CDD EGF 244 275 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun5254g00001 3 736 Receptor kinase-like Gene Family AT1G21230 41.293 1.60e-172 511
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vifaun5254g00001 PK_Tyr_Ser-Thr 1.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun5254g00001 - - mtr:25481909 919.842