Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun5234g00004 ATGGCATTTGATCAAAATTCCGCTCCCGCAGATCTGAGAGTATTGAATGTGGCTCCTATAATGGTCGAGGAGCCTCTCATTTCTCCGGCCAGCGTCACCACGCCTCCCACTCCTGATTCGGTTACCGATTATTTCTACCCGACGCCCGCCTCATCCGCTTGCGCCACGTCAGCAACTTGGTGCGTTCGCCCCATTGTGAGTCCTCCTTCTATCTACGGGAACCGTGTTGTTGCTGGGAATGCTTTGAATTTGGGAAATTGGGTAGGGGCTAATAATAGTAATAATAATACTAGTGGTTTGCATAATGTTTGTAATAATAATGATGGTGTAGCTATGAGTGTGAGTGGTTTTTCTTATGGTGCTCATGGTGGAACTGGAACTACTAGAGTGGTTGATGATACCGGGGATGATTCAAATTCTGGGAGGAAAGTTAAGTTTCTGTGTAGTTTTAGTGGCAAGATATTGCCTAGGCCTAGTGACGGAGTGTTGAGATATGTTGGAGGGCAGACGAGGATAATTAGTGTTAAGAAAGATGTGAGTTATGATGATTTAGTGCTAAAGATGGTGGATACTTATGGGCAACCTGTGGTTATTAAGTATCAGTTACCCGAGGAGGATCTCGATGCGTTAGTTTCAGTTGCTTGTCCTGATGATGTTGAGAATATGATGGAGGAGTATGGGAAATTGGTTGAGAGATCTCCGGATGGTTCGGCTAAATTGAGGGTTTTTTTGTTTCCTTTATCAGATGTTGATCTTTCTGGTGCAGCACAGTCCGGGGATTTGCAGGATACGGGACAAAAATATTTTGATGCGGTGAATGGTGTTATAGATGGGTATGGGGTTTGTTGTGGTTTCAAGAAGAAGGAGAGTGTTACAAGTGCAGCTTCAACGCAGAATTCTGATTTGAGTGGGATAGAGACTATTGATAGCTCAGTTGCTGGTCAAGGAGATTCGGCGTCCTGTGTGTTATCGCCTAGAGAGTATGTGGCTGCTTCTCCTGATACTAGTGTGAATATGGCGGCTTCTGAGTCCAGCACACCAGTTTACTCAGGTGCTTCTTCTGGTGTTTCATTTGGCATGCCTGCGGCTAAGACTGGTCCAACATACACTTCATATGCTCAGAATGAGGTTGAGTTAGAAAAGTCAGCGCCGGTTACTTTCTCTCAACAACCATTTGAACTGCACCAATCTGGAATAGAAATTCCACCACCTTCACCTTATTCAAACCATGCAGAGTATGTCCACTTGCCTCCTCAGACGGGGTTTCCAAATCCTCAACTATTAGGAAAGACTGGGCCTGTTTTTGCCCAACAGTTTCATAATAATAATACGCCTGGTTTAGCTTTTCGTCAGGTCATTTCCGGAGCACAGATGACAATGACTCAACCTTCTTCTCGCGTCGGTATTAGACCAAATGTCATCCAACAACAACCACTGATACAACCACAACATAATCATTTGAACCAATACAGTGATGAAAATACATCAGGAATAAGGATTGTCCAGCTTCCTGCAGAACATAGCTACAACACATATCAGGTTCCAGTTAATCAAGTTCCAGTGAATCAAGTTCTATCTGTCATTGTTGGGGGTAATCGCGGTTGGGTTCAGGTTCCTCCACAAGAGCATGTTGTTTTCTCTGATGGGTCATTACCTCAACAAAAAGTAATTATCCCAGAGAAAATCCAAAGAGTTGAGGAATGTTCTATGTGTCAGAAAAAGTTGCCTCATGCCCATTCAGATCCAGTGGTTCCGGATCAGCATGATGGCGGTTCAGGCCCAGTTCCTGATTCAAGCCCAAGTTATAATAGTTTTCCAATGGAGGACAAAGTAAAAGCTTACCCAACAAAGAGGGTTGAGCCTATGGTGGCATCACCCTTGAAGGAAGGTGTTGTTGAACAAGGGTTTAGCACAAGACCAAGCGTCGTTAGCAAGTTGGAAGTTCATAATGGAGAAACGATTGGTAGGACAGATGTAAAACATTCTTCTAGGGATGGTCATGGGACCATGGGAACGACACCACCTTCTTATCCAGATGATGTTGTCCACCAGCGTATGGCGCCGGTTGAAACCCGGGTTAAACAAGATGAGCAAGCGAATAAACATGTTAGTAATGATATACCTATAGTTGATGGAATGACTTTACATACTCCGGAGTGTGTTGCACAAGAATCTTCCAAAGAATACACAAATGAGCTTACTGGTGTCGTTTCTAAATCAGATGCAGTAAATAATTGGATTAGACAAGGCTATGTAAGGCCTGTTGATGGAAGGAATGACATTCTCAAGATAAACAATGCTGATGGTTATGTAAGTAATGATCAATGTTTACTTCCAGTTGATAAATCTTTAGATTACAAAAGTCAGATTGCTACAGAGGAAGAGATGATTCTGGACAACAACTTTGTCACACCAAAATTGATAGTTGACGCAGATAAAACTAAGATGATAGGTGTGCAGCCATGTTCTTCTAAGGAAGTTTTATACAGGCAGAATTCCAGGACAGGGGAAGACAATGATGTTGCACAACCACCTGTCTTGGGCGCTATTCAGTCAAATATTGTAAACCATCACAAGAATGATTCGACATCATCTACATCATCACCATCTTTCATGTTTGGTGATATACAGGAATCTCCAAACTCAGTTTTCGGCAATCAGGATCCTTGGAGTATACCACACGGAACCTACAAGAAATCTAATTTGGATGCACAATTGGATGGTGACCTATGCGAGTCATTCAAACAGAATTTAACTTTTGAAAATGCTTCAACCGAAGACCAACAACTTAAAGTTGTTGCTGAAGATGTAGCAGCTTCTGTTCTGCACCCATGTGCTCCTTCAAATCCTATCTTGCAAGCCGGAGATGTTTCCTGTCACAAAAACATTGAGGACGGTGATGTTCAAAATAATGCAATAGATGCAATGTGTAGAGATATAACTCAGGATGTCAAGAGTAACCCTCCAGAGAAGGGAAATTTTGGCTTTCCAACATCGGATGTTGGACGTTTGCAGATTATAAAGAACTGCGTCCTTGAAGAGCTGACAGAGTTGGGTTCTGGTACCTTTGGGACTGTTTATCATGGAAAATGGAGGGGAACCGATGTTGCAATCAAGAGAATAACTGATAGATGTTTTGCTGGAAAGCCCTCAGAGCAAGAGCGCATGAGAGATGACTTCTGGAATGAGGCAATCAAGCTTGCTGACTTGCACCATCCAAATGTAGTTGCTTTCTATGGTGTGGTGCTTGATGGACCAGGAGATTCTGTGGCAACAGTAACTGAGTATATGGCTAATGGTTCTCTCAGAACTGCCTTGCAAAAGAATGAGAGGAATCTAGACAAGCGCAGACGTCTTTTGATTGCAATGGATGTGGCCTTTGGAATGGAATACCTGCATGGAAAAAACATAGTACACTTTGACTTGAAAAGTGACAACTTGCTAGTGAATCTCCGAGATCCACAACGCCCAATATGCAAGGTTGGTGACTTGGGTCTATCCAAAGTAAAATGTCAGACTTTGATCTCTGGAGGTGTGAGAGGAACTCTACCATGGATGGCTCCAGAACTGCTGAATGGAAGCAGTAGCCTTGTTTCAGAGAAGGTCGATGTGTTCTCATTCGGTATTGTGATGTGGGAACTCTTAACCGGGGAAGAGCCATACGCAGATTTGCACTATGGTGCTATTATAGGTGGTATTGTGAGCAACACTTTGCGCCCTCCAATTCCCAAATCTTGTGACCTGGAATGGAGTGTGTTGATGGAGAGATGTTGGTCCTCAGAGCCATCAGAGAGACCCACCTTCACTGACATTGCTGATGAATTACGTTCTATGGCAAGCAAACGCCAGAATCCACAGCTACAACCCTCTCCTTTGTCTACACAAGTCAACAAATGA 3897 0.4329 MAFDQNSAPADLRVLNVAPIMVEEPLISPASVTTPPTPDSVTDYFYPTPASSACATSATWCVRPIVSPPSIYGNRVVAGNALNLGNWVGANNSNNNTSGLHNVCNNNDGVAMSVSGFSYGAHGGTGTTRVVDDTGDDSNSGRKVKFLCSFSGKILPRPSDGVLRYVGGQTRIISVKKDVSYDDLVLKMVDTYGQPVVIKYQLPEEDLDALVSVACPDDVENMMEEYGKLVERSPDGSAKLRVFLFPLSDVDLSGAAQSGDLQDTGQKYFDAVNGVIDGYGVCCGFKKKESVTSAASTQNSDLSGIETIDSSVAGQGDSASCVLSPREYVAASPDTSVNMAASESSTPVYSGASSGVSFGMPAAKTGPTYTSYAQNEVELEKSAPVTFSQQPFELHQSGIEIPPPSPYSNHAEYVHLPPQTGFPNPQLLGKTGPVFAQQFHNNNTPGLAFRQVISGAQMTMTQPSSRVGIRPNVIQQQPLIQPQHNHLNQYSDENTSGIRIVQLPAEHSYNTYQVPVNQVPVNQVLSVIVGGNRGWVQVPPQEHVVFSDGSLPQQKVIIPEKIQRVEECSMCQKKLPHAHSDPVVPDQHDGGSGPVPDSSPSYNSFPMEDKVKAYPTKRVEPMVASPLKEGVVEQGFSTRPSVVSKLEVHNGETIGRTDVKHSSRDGHGTMGTTPPSYPDDVVHQRMAPVETRVKQDEQANKHVSNDIPIVDGMTLHTPECVAQESSKEYTNELTGVVSKSDAVNNWIRQGYVRPVDGRNDILKINNADGYVSNDQCLLPVDKSLDYKSQIATEEEMILDNNFVTPKLIVDADKTKMIGVQPCSSKEVLYRQNSRTGEDNDVAQPPVLGAIQSNIVNHHKNDSTSSTSSPSFMFGDIQESPNSVFGNQDPWSIPHGTYKKSNLDAQLDGDLCESFKQNLTFENASTEDQQLKVVAEDVAASVLHPCAPSNPILQAGDVSCHKNIEDGDVQNNAIDAMCRDITQDVKSNPPEKGNFGFPTSDVGRLQIIKNCVLEELTELGSGTFGTVYHGKWRGTDVAIKRITDRCFAGKPSEQERMRDDFWNEAIKLADLHHPNVVAFYGVVLDGPGDSVATVTEYMANGSLRTALQKNERNLDKRRRLLIAMDVAFGMEYLHGKNIVHFDLKSDNLLVNLRDPQRPICKVGDLGLSKVKCQTLISGGVRGTLPWMAPELLNGSSSLVSEKVDVFSFGIVMWELLTGEEPYADLHYGAIIGGIVSNTLRPPIPKSCDLEWSVLMERCWSSEPSERPTFTDIADELRSMASKRQNPQLQPSPLSTQVNK 1298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun5234g00004 1298 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1137 1149 IPR008271 GO:0004672|GO:0006468
Vifaun5234g00004 1298 MobiDBLite consensus disorder prediction 1279 1298 - -
Vifaun5234g00004 1298 Gene3D Phosphorylase Kinase; domain 1 1006 1098 - -
Vifaun5234g00004 1298 ProSiteProfiles Protein kinase domain profile. 1012 1287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifaun5234g00004 1298 MobiDBLite consensus disorder prediction 656 681 - -
Vifaun5234g00004 1298 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 163 247 - -
Vifaun5234g00004 1298 Pfam Protein tyrosine and serine/threonine kinase 1015 1275 IPR001245 GO:0004672|GO:0006468
Vifaun5234g00004 1298 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1100 1290 - -
Vifaun5234g00004 1298 Gene3D - 164 246 - -
Vifaun5234g00004 1298 CDD PB1_UP2 147 245 - -
Vifaun5234g00004 1298 Pfam PB1 domain 163 246 IPR000270 GO:0005515
Vifaun5234g00004 1298 Gene3D Transferase(Phosphotransferase) domain 1 1099 1297 - -
Vifaun5234g00004 1298 SMART PB1_new 158 247 IPR000270 GO:0005515
Vifaun5234g00004 1298 SUPERFAMILY Protein kinase-like (PK-like) 1012 1273 IPR011009 -
Vifaun5234g00004 1298 SUPERFAMILY CAD & PB1 domains 159 251 - -
Vifaun5234g00004 1298 CDD STKc_MAP3K-like 1018 1275 - -
Vifaun5234g00004 1298 ProSitePatterns Protein kinases ATP-binding region signature. 1018 1049 IPR017441 GO:0005524
Vifaun5234g00004 1298 PRINTS Tyrosine kinase catalytic domain signature 1131 1149 IPR001245 GO:0004672|GO:0006468
Vifaun5234g00004 1298 PRINTS Tyrosine kinase catalytic domain signature 1246 1268 IPR001245 GO:0004672|GO:0006468
Vifaun5234g00004 1298 PRINTS Tyrosine kinase catalytic domain signature 1094 1107 IPR001245 GO:0004672|GO:0006468
Vifaun5234g00004 1298 PRINTS Tyrosine kinase catalytic domain signature 1202 1224 IPR001245 GO:0004672|GO:0006468
Vifaun5234g00004 1298 MobiDBLite consensus disorder prediction 576 603 - -
Vifaun5234g00004 1298 SMART serkin_6 1012 1278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifaun5234g00004 1298 PANTHER SERINE-THREONINE PROTEIN KINASE 210 1277 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun5234g00004 137 1281 MAP Kinase Kinase Kinase AT3G46920 43.361 0.0 817
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Vifaun5234g00004 PK_Tyr_Ser-Thr 7.3e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun5234g00004 - - mtr:11439273 2001.1