Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun5234g00003 ATGGCATTTGATCAAAATTCCGCTCCCGCAGATCTGAGAGTATTGAATGTGGCTCCTATAATGGTCGAGGAGCCTCTCATTTCTCCGGCCAGCGTCACCACGCCTCCCACTCCTGATTCGGTTACCGATTATTTCTACCCGACGCCCGCCTCATCCGCTTGCGCCACGTCAGCAACTTGGTGCGTTCGCCCCATTGTGAGTCCTCCTTCTATCTACGGGAACCGTGTTGTTGCTGGGAATGCTTTGAATTTGGGAAATTGGGTAGGGGCTAATAATAGTAATAATAATACTAGTGGTTTGCATAATGTTTGTAATAATAATGATGGTGTAGCTATGAGTGTGAGTGGTTTTTCTTATGGTGCTCATGGTGGAACTGGAACTACTAGAGTGGTTGATGATACCGGGGATGATTCAAATTCTGGGAGGAAAGTTAAGTTTCTGTGTAGTTTTAGTGGCAAGATATTGCCTAGGCCTAGTGACGGAGTGTTGAGATATGTTGGAGGGCAGACGAGGATAATTAGTGTTAAGAAAGATGTGAGTTATGATGATTTAGTGCTAAAGATGGTGGATACTTATGGGCAACCTGTGGTTATTAAGTATCAGTTACCCGAGGAGGATCTCGATGCGTTAGTTTCAGTTGCTTGTCCTGATGATGTTGAGAATATGATGGAGGAGTATGGGAAATTGGTTGAGAGATCTCCGGATGGTTCGGCTAAATTGAGGGTTTTTTTGTTTCCTTTATCAGATGTTGATCTTTCTGGTGCAGCACAGTCCGGGGATTTGCAGGATACGGGACAAAAATATTTTGATGCGGTGAATGGTGTTATAGATGGGTATGGGGTTTGTTGTGGTTTCAAGAAGAAGGAGAGTGTTACAAGTGCAGCTTCAACGCAGAATTCTGATTTGAGTGGGATAGAGACTATTGATAGCTCAGTTGCTGGTCAAGGAGATTCGGCGTCCTGTGTGTTATCGCCTAGAGAGTATGTGGCTGCTTCTCCTGATACTAGTGTGAATATGGCGGCTTCTGAGTCCAGCACACCAGTTTACTCAGGTGCTTCTTCTGGTGTTTCATTTGGCATGCCTGCGGCTAAGACTGGTCCAACATACACTTCATATGCTCAGAATGAGGTTGAGTTAGAAAAGTCAGCGCCGGTTACTTTCTCTCAACAACCATTTGAACTGCACCAATCTGGAATAGAAATTCCACCACCTTCACCTTATTCAAACCATGCAGAGTATGTCCACTTGCCTCCTCAGACGGGGTTTCCAAATCCTCAACTATTAGGAAAGACTGGGCCTGTTTTTGCCCAACAGTTTCATAATAATAATACGCCTGGTTTAGCTTTTCGTCAGGTCATTTCCGGAGCACAGATGACAATGACTCAACCTTCTTCTCGCGTCGGTATTAGACCAAATGTCATCCAACAACAACCACTGATACAACCACAACATAATCATTTGAACCAATACAGTGATGAAAATACATCAGGAATAAGGATTGTCCAGCTTCCTGCAGAACATAGCTACAACACATATCAGGTTCCAGTTAATCAAGTTCCAGTGAATCAAGTTCTATCTGTCATTGTTGGGGGTAATCGCGGTTGGGTTCAGGTTCCTCCACAAGAGCATGTTGTTTTCTCTGATGGGTCATTACCTCAACAAAAAGTAATTATCCCAGAGAAAATCCAAAGAGTTGAGGAATGTTCTATGTGTCAGAAAAAGTTGCCTCATGCCCATTCAGATCCAGTGGTTCCGGATCAGCATGATGGCGGTTCAGGCCCAGTTCCTGATTCAAGCCCAAGTTATAATAGTTTTCCAATGGAGGACAAAGTAAAAGCTTACCCAACAAAGAGGGTTGAGCCTATGGTGGCATCACCCTTGAAGGAAGGTGTTGTTGAACAAGGGTTTAGCACAAGACCAAGCGTCGTTAGCAAGTTGGAAGTTCATAATGGAGAAACGATTGGTAGGACAGATGTAAAACATTCTTCTAGGGATGGTCATGGGACCATGGGAACGACACCACCTTCTTATCCAGATGATGTTGTCCACCAGCGTATGGCGCCGGTTGAAACCCGGGTTAAACAAGATGAGCAAGCGAATAAACATGTTAGTAATGATATACCTATAGTTGATGGAATGACTTTACATACTCCGGAGTGTGTTGCACAAGAATCTTCCAAAGAATACACAAATGAGCTTACTGGTGTCGTTTCTAAATCAGATGCAGTAAATAATTGGATTAGACAAGGCTATGTAAGGCCTGTTGATGGAAGGAATGACATTCTCAAGATAAACAATGCTGATGGTTATGTAAGTAATGATCAATGTTTACTTCCAGTTGATAAATCTTTAGATTACAAAAGTCAGATTGCTACAGAGGAAGAGATGATTCTGGACAACAACTTTGTCACACCAAAATTGATAGTTGACGCAGATAAAACTAAGATGATAGGTGTGCAGCCATGTTCTTCTAAGGAAGTTTTATACAGGCAGAATTCCAGGACAGGGGAAGACAATGATGTTGCACAACCACCTGTCTTGGGCGCTATTCAGTCAAATATTGTAAACCATCACAAGAATGATTCGACATCATCTACATCATCACCATCTTTCATGTTTGGTGATATACAGGAATCTCCAAACTCAGTTTTCGGCAATCAGGATCCTTGGAGTATACCACACGGAACCTACAAGAAATCTAATTTGGATGCACAATTGGATGGTGACCTATGCGAGTCATTCAAACAGAATTTAACTTTTGAAAATGGTTGGTGTGACAAAGCTTCAACCGAAGACCAACAACTTAAAGTTGTTGCTGAAGATGTAGCAGCTTCTGTTCTGCACCCATGTGCTCCTTCAAATCCTATCTTGCAAGCCGGAGATGTTTCCTGTCACAAAAACATTGAGGACGGTGATGTTCAAAATAATGCAATAGATGCAATGTGTAGAGATATAACTCAGGATGTCAAGAGTAACCCTCCAGAGAAGGGAAATTTTGGCTTTCCAACATCGGATGTTGGACGTTTGCAGATTATAAAGAACTGCGTCCTTGAAGAGCTGACAGAGTTGGGTTCTGGTACCTTTGGGACTGTTTATCATGGAAAATGGAGGGGAACCGATGTTGCAATCAAGAGAATAACTGATAGATGTTTTGCTGGAAAGCCCTCAGAGCAAGAGCGCATGAGAGATGACTTCTGGAATGAGGCAATCAAGCTTGCTGACTTGCACCATCCAAATGTAGTTGCTTTCTATGGTGTGGTGCTTGATGGACCAGGAGATTCTGTGGCAACAGTAACTGAGTATATGGCTAATGGTTCTCTCAGAACTGCCTTGCAAAAGAATGAGAGGAATCTAGACAAGCGCAGACGTCTTTTGATTGCAATGGATGTGGCCTTTGGAATGGAATACCTGCATGGAAAAAACATAGTACACTTTGACTTGAAAAGTGACAACTTGCTAGTGAATCTCCGAGATCCACAACGCCCAATATGCAAGGTTGGTGACTTGGGTCTATCCAAAGTAAAATGTCAGACTTTGATCTCTGGAGGTGTGAGAGGAACTCTACCATGGATGGCTCCAGAACTGCTGAATGGAAGCAGTAGCCTTGTTTCAGAGAAGGTCGATGTGTTCTCATTCGGTATTGTGATGTGGGAACTCTTAACCGGGGAAGAGCCATACGCAGATTTGCACTATGGTGCTATTATAGGTGGTATTGTGAGCAACACTTTGCGCCCTCCAATTCCCAAATCTTGTGACCTGGAATGGAGTGTGTTGATGGAGAGATGTTGGTCCTCAGAGCCATCAGAGAGACCCACCTTCACTGACATTGCTGATGAATTACGTTCTATGGCAAGCAAACGCCAGAATCCACAGCTACAACCCTCTCCTTTGTCTACACAAGTCAACAAATGA 3912 0.433 MAFDQNSAPADLRVLNVAPIMVEEPLISPASVTTPPTPDSVTDYFYPTPASSACATSATWCVRPIVSPPSIYGNRVVAGNALNLGNWVGANNSNNNTSGLHNVCNNNDGVAMSVSGFSYGAHGGTGTTRVVDDTGDDSNSGRKVKFLCSFSGKILPRPSDGVLRYVGGQTRIISVKKDVSYDDLVLKMVDTYGQPVVIKYQLPEEDLDALVSVACPDDVENMMEEYGKLVERSPDGSAKLRVFLFPLSDVDLSGAAQSGDLQDTGQKYFDAVNGVIDGYGVCCGFKKKESVTSAASTQNSDLSGIETIDSSVAGQGDSASCVLSPREYVAASPDTSVNMAASESSTPVYSGASSGVSFGMPAAKTGPTYTSYAQNEVELEKSAPVTFSQQPFELHQSGIEIPPPSPYSNHAEYVHLPPQTGFPNPQLLGKTGPVFAQQFHNNNTPGLAFRQVISGAQMTMTQPSSRVGIRPNVIQQQPLIQPQHNHLNQYSDENTSGIRIVQLPAEHSYNTYQVPVNQVPVNQVLSVIVGGNRGWVQVPPQEHVVFSDGSLPQQKVIIPEKIQRVEECSMCQKKLPHAHSDPVVPDQHDGGSGPVPDSSPSYNSFPMEDKVKAYPTKRVEPMVASPLKEGVVEQGFSTRPSVVSKLEVHNGETIGRTDVKHSSRDGHGTMGTTPPSYPDDVVHQRMAPVETRVKQDEQANKHVSNDIPIVDGMTLHTPECVAQESSKEYTNELTGVVSKSDAVNNWIRQGYVRPVDGRNDILKINNADGYVSNDQCLLPVDKSLDYKSQIATEEEMILDNNFVTPKLIVDADKTKMIGVQPCSSKEVLYRQNSRTGEDNDVAQPPVLGAIQSNIVNHHKNDSTSSTSSPSFMFGDIQESPNSVFGNQDPWSIPHGTYKKSNLDAQLDGDLCESFKQNLTFENGWCDKASTEDQQLKVVAEDVAASVLHPCAPSNPILQAGDVSCHKNIEDGDVQNNAIDAMCRDITQDVKSNPPEKGNFGFPTSDVGRLQIIKNCVLEELTELGSGTFGTVYHGKWRGTDVAIKRITDRCFAGKPSEQERMRDDFWNEAIKLADLHHPNVVAFYGVVLDGPGDSVATVTEYMANGSLRTALQKNERNLDKRRRLLIAMDVAFGMEYLHGKNIVHFDLKSDNLLVNLRDPQRPICKVGDLGLSKVKCQTLISGGVRGTLPWMAPELLNGSSSLVSEKVDVFSFGIVMWELLTGEEPYADLHYGAIIGGIVSNTLRPPIPKSCDLEWSVLMERCWSSEPSERPTFTDIADELRSMASKRQNPQLQPSPLSTQVNK 1303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun5234g00003 1303 Gene3D Transferase(Phosphotransferase) domain 1 1104 1302 - -
Vifaun5234g00003 1303 MobiDBLite consensus disorder prediction 656 681 - -
Vifaun5234g00003 1303 Gene3D - 164 246 - -
Vifaun5234g00003 1303 ProSitePatterns Protein kinases ATP-binding region signature. 1023 1054 IPR017441 GO:0005524
Vifaun5234g00003 1303 SMART serkin_6 1017 1283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifaun5234g00003 1303 PRINTS Tyrosine kinase catalytic domain signature 1251 1273 IPR001245 GO:0004672|GO:0006468
Vifaun5234g00003 1303 PRINTS Tyrosine kinase catalytic domain signature 1207 1229 IPR001245 GO:0004672|GO:0006468
Vifaun5234g00003 1303 PRINTS Tyrosine kinase catalytic domain signature 1099 1112 IPR001245 GO:0004672|GO:0006468
Vifaun5234g00003 1303 PRINTS Tyrosine kinase catalytic domain signature 1136 1154 IPR001245 GO:0004672|GO:0006468
Vifaun5234g00003 1303 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 163 247 - -
Vifaun5234g00003 1303 SUPERFAMILY Protein kinase-like (PK-like) 1017 1278 IPR011009 -
Vifaun5234g00003 1303 Pfam Protein tyrosine and serine/threonine kinase 1020 1280 IPR001245 GO:0004672|GO:0006468
Vifaun5234g00003 1303 CDD STKc_MAP3K-like 1023 1280 - -
Vifaun5234g00003 1303 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1105 1295 - -
Vifaun5234g00003 1303 CDD PB1_UP2 147 245 - -
Vifaun5234g00003 1303 Pfam PB1 domain 163 246 IPR000270 GO:0005515
Vifaun5234g00003 1303 ProSiteProfiles Protein kinase domain profile. 1017 1292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifaun5234g00003 1303 MobiDBLite consensus disorder prediction 1284 1303 - -
Vifaun5234g00003 1303 SMART PB1_new 158 247 IPR000270 GO:0005515
Vifaun5234g00003 1303 Gene3D Phosphorylase Kinase; domain 1 1011 1103 - -
Vifaun5234g00003 1303 PANTHER SERINE-THREONINE PROTEIN KINASE 210 1282 - -
Vifaun5234g00003 1303 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1142 1154 IPR008271 GO:0004672|GO:0006468
Vifaun5234g00003 1303 MobiDBLite consensus disorder prediction 576 603 - -
Vifaun5234g00003 1303 SUPERFAMILY CAD & PB1 domains 159 251 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun5234g00003 137 1286 MAP Kinase Kinase Kinase AT3G46920 43.180 0.0 816
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Vifaun5234g00003 PK_Tyr_Ser-Thr 7.4e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun5234g00003 - - mtr:11439273 2021.51