Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun5223g00002 ATGAGCCGCTCCAGAAACAATCTCACATTCGAAGATGCAATTCAGTTTGTAATGGAAGTAAATGATACATTTAAATATAAGAGGGGAAAATTTGCTGAATTCTTAAAAATTCTAAATGATTGCAAAGCCAGAAGAATTGACCTTGAAGATGTCAAAGAAAGATTGATGGAGCTGTTTAAAGAGCACAAACATTTACTTTTGGGAATCAATGCCTTCCTGCCACCAGGACATGAAATCTCACTTCCATCAGATGATGAACAACAAAGTGATGATGAAGAATAA 282 0.3511 MSRSRNNLTFEDAIQFVMEVNDTFKYKRGKFAEFLKILNDCKARRIDLEDVKERLMELFKEHKHLLLGINAFLPPGHEISLPSDDEQQSDDEE 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun5223g00002 93 ProSiteProfiles PAH domain profile. 6 76 IPR003822 GO:0006355
Vifaun5223g00002 93 Pfam Paired amphipathic helix repeat 30 73 IPR003822 GO:0006355
Vifaun5223g00002 93 PANTHER SIN3B-RELATED 8 87 IPR039774 GO:0003714
Vifaun5223g00002 93 Gene3D Paired amphipathic helix 5 76 IPR036600 GO:0006355
Vifaun5223g00002 93 SUPERFAMILY PAH2 domain 5 75 IPR036600 GO:0006355
Vifaun5223g00002 93 FunFam Paired amphipathic helix protein Sin3 12 74 - -
Vifaun5223g00002 93 MobiDBLite consensus disorder prediction 74 93 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun5223g00002 8 85 WRKY Transcription Factor Family AT4G12020 41.772 6.79e-13 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifaun5223g00002 PAH 9.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun5223g00002 - - mtr:11416202 88.9669