Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun5203g00003 ATGGATGAAATTGAAATCAATGTTCCTTCCCATTTTCTCTGCCCCATTTCCCTCCAACTCATGAAGGATCCTGTTACTCTTTCAACAGGAATAACCTACGACAGAAACAACATAGAAAAATGGTTATTTTCATTCCAAAACAAAACATGTCCTGTCACAAAACAAACGTTGTTACAAACCGATCTTAATAATGTTACACCAAACCACACTCTTCGCCGCTTGATTCAGTCTTGGTGCACTTTCAATGCTTCATTTGGTGTTGAACGTATTCCAACACCAAAATCACCAGTTGATAGAACACAGATTCTTAAACTCCTCAATGAAGCAAAGAAATTTCCAGAAACGCAACCTAGTTGTCTCGTAAAGCTTCGTTCTATCGTCGTCGAAAGCGAAAGGAACAAAAGATGCTTGGAATCTGCAGGTGCAGTAGAGTTCTTAGCTTCAACCATGAAGAACAATTCAAGTTCAATTTCATTGAGTGAAGCTGCTATAGAAGTTTTGTTTCATATAAATCCTTCTGAAGTTCACATTAAGAATCTGATCAAGAATGAAAGTATTCAATTTATTGAGTCATTGTTTCATGTGATGAAGCTTGGGAGCTGTCAATCTAGAGGCTATGCAACAATGCTATTGAAATCGGCTTTCCAAGTATGCGACCCGATTCAGTTAATCGGCGTAAAAAAGGCGATATTCGAAGAGGTATCGAGAGTACTAATCGATAAGATTTCACAACAAGCTACAAAAGCTGCATTGAAGTTACTTGTGGAGCTTTTACCATTGGGAAGAAATCGAATAAAAGCGGTCGAAGGTGGCGCGGTTTTAGTCCTCGTAGAGCTTCTTTTCGATCTTTCGGAAAGAAGGGTTTGTGAATTGATTTTAATAGGTTTAGATCAACTTTGTGGCTGTGCTGAAGGGCGTGCGGAGTTGTTGAATCATGGAGCAGGAATTGCTATTGTGTCAAAGAAAATTTTGAGGGTTTCTCATGTTGCTAGTGATAGAGGGGTGAGAATTTTGAGTTCTATTTGTAGGTATTCTGCAAACTCTAGAGTTTTACATGAAATGTTGCAAGTTGGTGGTGTTTCAAAGTTGTGTTTGGTGCTTCAAGTTGATAGTAGTTTGAAGACTAAAGAGAAGGCTAAGGAGATTCTCAAATTGCATTCTTCTGTTTGGAAGAATTCTACTTGTATTCCTGTTCCTTTGTTGTCTTCTTATCCATGA 1218 0.3834 MDEIEINVPSHFLCPISLQLMKDPVTLSTGITYDRNNIEKWLFSFQNKTCPVTKQTLLQTDLNNVTPNHTLRRLIQSWCTFNASFGVERIPTPKSPVDRTQILKLLNEAKKFPETQPSCLVKLRSIVVESERNKRCLESAGAVEFLASTMKNNSSSISLSEAAIEVLFHINPSEVHIKNLIKNESIQFIESLFHVMKLGSCQSRGYATMLLKSAFQVCDPIQLIGVKKAIFEEVSRVLIDKISQQATKAALKLLVELLPLGRNRIKAVEGGAVLVLVELLFDLSERRVCELILIGLDQLCGCAEGRAELLNHGAGIAIVSKKILRVSHVASDRGVRILSSICRYSANSRVLHEMLQVGGVSKLCLVLQVDSSLKTKEKAKEILKLHSSVWKNSTCIPVPLLSSYP 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun5203g00003 405 PANTHER WDSAM1 PROTEIN 5 397 IPR045185 GO:0061630
Vifaun5203g00003 405 Pfam U-box domain 8 80 IPR003613 GO:0004842|GO:0016567
Vifaun5203g00003 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 85 IPR013083 -
Vifaun5203g00003 405 ProSiteProfiles U-box domain profile. 7 85 IPR003613 GO:0004842|GO:0016567
Vifaun5203g00003 405 CDD RING-Ubox_PUB 9 62 IPR045210 -
Vifaun5203g00003 405 SUPERFAMILY ARM repeat 102 384 IPR016024 -
Vifaun5203g00003 405 SUPERFAMILY RING/U-box 2 80 - -
Vifaun5203g00003 405 Gene3D - 99 394 IPR011989 -
Vifaun5203g00003 405 SMART Ubox_2 11 78 IPR003613 GO:0004842|GO:0016567
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun5203g00003 1 405 U-box Gene Family AT2G35930 55.257 1.45e-156 446