Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun5152g00001 ATGGAAGTGCCAATATTATGTGCTGGTGTTATTGACTTCTTAGCTTCTACTGTGGTAAACAATAGTTGCAACATCGATTCTGCATCTTTATTATTGTCAGAGACTAATGTTAATCTGGTTGATGAAGCATTAAGCATACTTCATAACCTTCATGTATCTGAAGCTGGATTGAAGAATCTACTAGCTTTCAAAAACGGTCAATTTATCGAGTCCTTAACAAAAGTTTTACAGAAAGGTTTCTTTGAATCAAGAGCTTATGCAGTTTTCTTGCTTAAATCTATGACAGAAGTAGCTGAACCAGTGCAGTTACTTCATCAAAAAACCGATTTATTCGTGGAACTGGTGCAAGTTTTGAAGGATCAAATATCACAAAAGGTATCAAAAGCAGCCCTTCAGACACTAATTATCCTCTGTCCATGTGGAAGAAACAGAATCAAAGGTGTTGAAGCAGGAACAGTTCCTGTCTTAATAGAGCTTCTGTTAGAGAATTGCAAAGACAGAAAACCAAATGAAATGATGTTGGTTTTATTGGAATGTCTCTGTCAGTGTGCAGAAGGAAGAGCTGAACTTCTGAGACATGGTGCAGGAATGGCTGTTGTATCTGCGATCCGCGATGAAATAAACGATATCGAGATAATCTACAAACCGCTTTCTGATATGCTCGAATGCGTAGGCGAAGCGGATGTAGTTTTCACAAGCACGGCATCAGAGAATCCTTTGATTTTAAAACAACATGTTAAGGAACTTCCTTTCGCAAGCGAAGAAATGGGACGAAAGTGCCTCTTCGTCGATATTTCTGTTCCGAGGAACGTAGGTTCGTGCGTCGATGACCTCTAA 837 0.3919 MEVPILCAGVIDFLASTVVNNSCNIDSASLLLSETNVNLVDEALSILHNLHVSEAGLKNLLAFKNGQFIESLTKVLQKGFFESRAYAVFLLKSMTEVAEPVQLLHQKTDLFVELVQVLKDQISQKVSKAALQTLIILCPCGRNRIKGVEAGTVPVLIELLLENCKDRKPNEMMLVLLECLCQCAEGRAELLRHGAGMAVVSAIRDEINDIEIIYKPLSDMLECVGEADVVFTSTASENPLILKQHVKELPFASEEMGRKCLFVDISVPRNVGSCVDDL 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun5152g00001 278 Gene3D - 8 166 IPR011989 -
Vifaun5152g00001 278 Pfam Shikimate / quinate 5-dehydrogenase 200 277 IPR006151 -
Vifaun5152g00001 278 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 202 274 IPR036291 -
Vifaun5152g00001 278 PANTHER WDSAM1 PROTEIN 9 201 IPR045185 GO:0061630
Vifaun5152g00001 278 Gene3D - 184 278 - -
Vifaun5152g00001 278 SUPERFAMILY ARM repeat 29 209 IPR016024 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun5152g00001 34 201 U-box Gene Family AT3G52450 50.877 1.88e-51 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun5152g00001 - - mtr:25499491 320.087