Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun5088g00002 ATGGGAAACATCTCTAGCCACGCCGCCAACAACCGTCGTCGACACGGCGCCGCTTCTAGAAGAACTCACCCACCGCCACCTCCTCCGGTAACACCTCAACCCGAAATCGCTTCACATCAATTTATCTACCCCGGTGCACCACCGCACCTGAACCCGAACCCGAACCCTCCCATGCATTATCCTCAGTATCATTATCCTGGTTATTATCCACCGCCGCCGGTACCTATGCCTCATCATCATCAGCAACATCCTCATCCGCATATGGACCCCCGATATTACCCTTGCGGACCGGTCATGAATCAGCCTACACCGTTTGTTGAGCACCAGAAAGCTGTTACTATAAGGAATGATGTTAATATTAAGAAGGAGACTCTTGCGATTTCGCCGGATGAGGAAAACAATGGTTTCTTCCTTGTTTCGTTTACCTTTGATGCCACCGTTTCTGGGAGCATCACCATATTTTTCTTTGCAAAAGAAAATGAAGGCTGCATCCTCACACCGACCAAGGAAAACCATCTTGCACCTGTGACTATACAATTCCAGCAAGGTCTTGGACAGAAGTTTAGACAGCAAGCTGGAACTGGTATTAACTTTTCAACGTTCGAGGAGTCAGATTTATTGAAGGTGGGTGACATGGATGTCTACCCTTTAGCAGTGAAGGCAGAGGCATCCTCTAATAATCACGATGAATCAAATGAGACTGTGGCATCTGGTAACCCGAACTCTCAGATAACTCAAGCGGTGTTCGAAAAGGAAAAAGGAGAGTTCCGGGTAAAAGTTGTAAAGCAGATTTTGTCGGTGAATGGAATGCGGTATGAGTTGCAGGAGATATATGGTATTGGAAATTCAGTAGAGAGTGGCGTGGATGACAACGACCAAGGCAAAGAGTGTGTGATCTGCTTGTCAGAGCCTCGTGACACAATTGTTCATCCCTGCCGACATATGTGCATGTGTAGCGGATGTGCAACAGTTTTGAGGTTCCAAACAAATAGATGCCCGATTTGCAGACAACCGATTGAGAGGCTTTTGGAGATAAAGGTAGGGACTGAGGAGTAA 1056 0.4706 MGNISSHAANNRRRHGAASRRTHPPPPPPVTPQPEIASHQFIYPGAPPHLNPNPNPPMHYPQYHYPGYYPPPPVPMPHHHQQHPHPHMDPRYYPCGPVMNQPTPFVEHQKAVTIRNDVNIKKETLAISPDEENNGFFLVSFTFDATVSGSITIFFFAKENEGCILTPTKENHLAPVTIQFQQGLGQKFRQQAGTGINFSTFEESDLLKVGDMDVYPLAVKAEASSNNHDESNETVASGNPNSQITQAVFEKEKGEFRVKVVKQILSVNGMRYELQEIYGIGNSVESGVDDNDQGKECVICLSEPRDTIVHPCRHMCMCSGCATVLRFQTNRCPICRQPIERLLEIKVGTEE 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun5088g00002 351 PANTHER MAHOGUNIN 1 346 IPR045194 GO:0061630
Vifaun5088g00002 351 FunFam probable E3 ubiquitin-protein ligase LOG2 281 346 - -
Vifaun5088g00002 351 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 346 IPR013083 -
Vifaun5088g00002 351 CDD mRING-HC-C3HC5_MGRN1-like 295 336 IPR045195 -
Vifaun5088g00002 351 Pfam Zinc finger, C3HC4 type (RING finger) 295 341 - -
Vifaun5088g00002 351 SUPERFAMILY RING/U-box 296 341 - -
Vifaun5088g00002 351 MobiDBLite consensus disorder prediction 224 242 - -
Vifaun5088g00002 351 ProSiteProfiles Zinc finger RING-type profile. 297 336 IPR001841 -
Vifaun5088g00002 351 MobiDBLite consensus disorder prediction 223 242 - -
Vifaun5088g00002 351 MobiDBLite consensus disorder prediction 1 35 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun5088g00002 91 316 C3H Transcription Factor Family AT3G09770 63.636 4.50e-97 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun5088g00002 - - aprc:113862864 494.582