Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun4956g00003 ATGGAAGAAATCGTGTTACTGGTCGATGATTTGAAGCTACTTTCAGGAATTTCTCGCTGTAGAATTTGCCATGAAGAAGAGTTTGAAACCACCAAAACCTTGGAAGCACCATGTTCTTGTTCCGGAACCGTTAAGTTTGCTCATAGAGATTGTATACAAAGATGGTGTAACGAAAAAGGAAATATAATTTGTGAAATATGTCTCCAGCAATATGAACCTGGATATACGACTCTTCCAAAGAAGACAGAGATAAATGATGAAGCAATGTCCATAAGGGTAGAGGAAGAAGCTTCAGACTTGAGAGAAAATATGGTGGAAGGAACTGTAATAGAAAGTGATTATTCAGAATGCAGCTCTACTGCTGACAGAAGTGCAACTCACTGTCGATCACTTGCAATAGCTTTTACACTTGTGTTGCTGGTAAGACATTGTCTTGTAGTGCCTACAAGTGGAGCTGAAGATTACCCATTTACACCTCTTACTGTCATTGTACTAAAAGCTCTTGGAATTATTATACCCATGTACATAGTTACAAAGACAATTGGAGCCATTCAGAATACTATTAGGCGCTATCGTGGCTCTGACTATGACACATCTCTTCCCGATGAACATTACAGAAATGATGCAACACACCAAGAAAATTTAATAGATTCATAG 657 0.3836 MEEIVLLVDDLKLLSGISRCRICHEEEFETTKTLEAPCSCSGTVKFAHRDCIQRWCNEKGNIICEICLQQYEPGYTTLPKKTEINDEAMSIRVEEEASDLRENMVEGTVIESDYSECSSTADRSATHCRSLAIAFTLVLLVRHCLVVPTSGAEDYPFTPLTVIVLKALGIIIPMYIVTKTIGAIQNTIRRYRGSDYDTSLPDEHYRNDATHQENLIDS 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun4956g00003 218 CDD RING_CH-C4HC3_MARCH 20 67 - -
Vifaun4956g00003 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 77 IPR013083 -
Vifaun4956g00003 218 Pfam RING-variant domain 20 67 IPR011016 GO:0008270
Vifaun4956g00003 218 ProSiteProfiles Zinc finger RING-CH-type profile. 12 74 IPR011016 GO:0008270
Vifaun4956g00003 218 Pfam Protein of unknown function (DUF3675) 73 181 IPR022143 -
Vifaun4956g00003 218 SUPERFAMILY RING/U-box 19 72 - -
Vifaun4956g00003 218 FunFam E3 ubiquitin-protein ligase MARCH4 9 77 - -
Vifaun4956g00003 218 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 18 190 IPR033275 -
Vifaun4956g00003 218 SMART ringv_2 19 68 IPR011016 GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun4956g00003 20 67 C3H Transcription Factor Family AT5G05830 40.385 1.85e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun4956g00003 - - mtr:11420992 354.755