Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun4956g00001 ATGAACACAAAAGGCGTCGATTTTGCCTCAGACAAAGTTCTAGCGAGTCGATTTCTTTCCGAATTCGCAGACGCTAATGGTGAAGCGAAATACATCAACATCCTGCAAGATGTTGCGAACCACAAAGCTCGATCTGTTGAAATTGATCTTGACGACTTGATGAACTATAAGGATCTAGATGAGGAGTTTCTGACTCGAGTTACTGAGAATACGAGAAGATATGTAGGGATTTTTGCTGATGCGATTGACGAGCTTATGCCGGAGCCTACTGAGACGTTTGTGGATGATGATCATGATATTTTGATGACTCAGAGATCTGATGAAGGGACTGAAGGTGCTGATGGTTCTGACCCGCACCAGAAGATGCCTGCTGAAATTAAACGCTTCTTTGAGGTTTATATTAAGGCATCTTCGAAAGGACGGCCATTTACAATTAGGGAGGTTGCTGTGTACACCTGTGAGGACTGTGGCTTTGAAATTTACCAGGAAGTAACAGCTAGAATATTCATGCCTTTGTTTGAGTGTCCATCAAGGCGATGTGTCATGAACAAGAGCAAGGGTAACGTCATCCTTCAACTGAGAGCGTCAAAGTTTTTGCGATTTCAAGAGGCCAAAATTCAAGAGTTAGCTGAACATGTTCCAAAGGGTCATATTCCACGAACAATGACTGTTCATCTTCGGGGAGAACTCACTAGAAAGGTAGCTCCTGGTGATGTTGTTGAACTATCTGGGATTTTTCTTCCTATACCTTATGTTGGTTTTAGAGCAATGCGTGCTGGCCTAGTTGCTGACACATACTTAGAGGCCATGTCTGTGTCTCATTTTAAGAAAAAATATGAAGAATATGAACTTAGAGGAGACGAGGAAGAGCAGATTAAACGTCTAGCAGAAGACGGTGATATCTATGATAAGCTGGCGAGGTCATTAGCTCCTGAAATTTTTGGACATGAAGATATTAAGAAAGCACTGCTGCTGCTTCTTGTTGGTGCACCCCATCGGCAATTGAAAGATGGAATGAAGATTAGAGGAGATCTACATATATGTTTGATGGGGGATCCTGGTGTTGCCAAGAGTCAGCTTCTTAAACACATAATCAATGTAGCACCCAGGGGTGTATACACCACTGGAAAAGGAAGTAGTGGAGTTGGACTAACTGCTGCTGTTCAGAAAGATCCAGTGACAAATGAGATGGTTTTGGAGGGTGGAGCATTGGTGCTATCAGATATGGGCATATGTGCCATTGATGAATTTGACAAGATGGATGAATCAGATCGTACATCTATACATGAAGTTATGGAACAACAGACTGTTAGCATTGCCAAGGCTGGGATCACTACATCACTGAATGCAAGGGCTGCTGTCCTTGCTGCAGCTAATCCTGCATGGGGAAGATATGATCTAAGAAGAACTCCTGCTGAAAATATTAATCTTCCACCTGCCCTCCTATCAAGGTTTGATTTACTGTGGTTAATTCTAGATCGAGCTGATATGGATAACGATCTTGAAATGGCAAGGCATGTTGTCTATGTCCACCAAAACAAAGAGTCACCTGCACTAGGATTCACTCCTCTTGAACCATCTGTTCTACGTGCATACATATCAGCTGCTAGAAGATTGTCTCCTACTGTCCCAAGGGAACTTGAAGAGTATATTGCCAGTGCTTACTCCAGCATTCGCCAAGAAGAAGCCAAATCCACCACTCCACATTCCTATACGACTGTCAGAACATTGCTCAGCATTCTCCGCATATCTGCTGCCCTAGCAAGACTCCGTTTTGCTGAAACTGTTGCTCAAAGTGACGTGGATGAGGCATTGAGGTTAATGCAGATGTCAAAATTCTCTCTGTACTCTGATGACCGTCAAAGATCAGGTCTGGATGCTATATCTGATATTTATTCCATACTTCGTGATGAAGCTGCTAGAAGTCACAAAATGGATGTCAACTATCGTGATGCATTGAATTGGATTTCTCGGAAGGGGTACAGTGAAGCCCAGTTGAAAGAGTGTTTAGAGGAGTATGCAGCATTGAATGTATGGCAGATACATCCTCAAACCTTCGATATAAAATTTATTGATGCTTGA 2082 0.427 MNTKGVDFASDKVLASRFLSEFADANGEAKYINILQDVANHKARSVEIDLDDLMNYKDLDEEFLTRVTENTRRYVGIFADAIDELMPEPTETFVDDDHDILMTQRSDEGTEGADGSDPHQKMPAEIKRFFEVYIKASSKGRPFTIREVAVYTCEDCGFEIYQEVTARIFMPLFECPSRRCVMNKSKGNVILQLRASKFLRFQEAKIQELAEHVPKGHIPRTMTVHLRGELTRKVAPGDVVELSGIFLPIPYVGFRAMRAGLVADTYLEAMSVSHFKKKYEEYELRGDEEEQIKRLAEDGDIYDKLARSLAPEIFGHEDIKKALLLLLVGAPHRQLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGKGSSGVGLTAAVQKDPVTNEMVLEGGALVLSDMGICAIDEFDKMDESDRTSIHEVMEQQTVSIAKAGITTSLNARAAVLAAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDNDLEMARHVVYVHQNKESPALGFTPLEPSVLRAYISAARRLSPTVPRELEEYIASAYSSIRQEEAKSTTPHSYTTVRTLLSILRISAALARLRFAETVAQSDVDEALRLMQMSKFSLYSDDRQRSGLDAISDIYSILRDEAARSHKMDVNYRDALNWISRKGYSEAQLKECLEEYAALNVWQIHPQTFDIKFIDA 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun4956g00001 693 PRINTS Mini-chromosome maintenance (MCM) protein family signature 481 489 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vifaun4956g00001 693 PRINTS Mini-chromosome maintenance (MCM) protein family signature 402 416 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vifaun4956g00001 693 PRINTS Mini-chromosome maintenance (MCM) protein family signature 430 443 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vifaun4956g00001 693 PRINTS Mini-chromosome maintenance (MCM) protein family signature 454 466 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vifaun4956g00001 693 PRINTS Mini-chromosome maintenance (MCM) protein family signature 342 357 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vifaun4956g00001 693 Pfam MCM N-terminal domain 17 135 IPR027925 -
Vifaun4956g00001 693 FunFam DNA replication licensing factor MCM7 145 199 - -
Vifaun4956g00001 693 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 311 619 IPR027417 -
Vifaun4956g00001 693 Gene3D - 186 278 IPR012340 -
Vifaun4956g00001 693 FunFam DNA replication licensing factor MCM7 286 618 - -
Vifaun4956g00001 693 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 18 624 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vifaun4956g00001 693 CDD MCM7 304 611 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Vifaun4956g00001 693 ProSitePatterns MCM family signature. 410 418 IPR018525 GO:0003677|GO:0005524|GO:0006260
Vifaun4956g00001 693 Gene3D - 12 103 - -
Vifaun4956g00001 693 SMART mcm 141 613 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vifaun4956g00001 693 Pfam MCM OB domain 147 248 IPR033762 -
Vifaun4956g00001 693 SUPERFAMILY Nucleic acid-binding proteins 17 269 IPR012340 -
Vifaun4956g00001 693 Gene3D - 286 618 IPR027417 -
Vifaun4956g00001 693 ProSiteProfiles MCM family domain profile. 301 507 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vifaun4956g00001 693 Pfam MCM P-loop domain 289 511 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vifaun4956g00001 693 Pfam MCM AAA-lid domain 528 611 IPR041562 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun4956g00001 4 691 Core DNA Replication Machinery Family AT4G02060 80.420 0.0 1197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun4956g00001 K02210 - qsu:112007744 1229.93