Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun4777g00004 ATGGAAGAATCTCAAAAATGTTGGAGAAAACAAGTAGACGAAAATCTCAAAAGACTACACTCTCTCTTGTTCGGCGTAGAACGCGCCATCGAAAACCACGATTTCTCTTCCGCCTACATCCTTTCTCTTCGTCTCCTCGGATTCCTAGATTCTCATTCTCAATCGGAAATCGATCAAGCGTTCATTCAACACATTCGTCGTCAAGCTTTAACCTACCTTCACACCGCCAGAAAATCGATAACTCCAGTAACTAATAGCCAAGCTTTTGAGCAAGTAAAGAGGTCACCAGGACCTGTTTTTGGCACATCAGGAGATATTGACATTGAAAAGATACAGAATTCAAAATATTTTCAAGCTCTTCTCAAGCCATCTAAAGAAAAAGATTGCAATCAATTGTTCCAGGTTGATCAATCGAGGAAGCAAAACAAAGCAGAAAAGGAAGCCTCAAAGGAAGGGGTGCAAGCAAAGTTAACATCTTTGTATGGGAAAAGCAGCTTGAGGACTAAAGGAGAGGAACGAGCTTATGGAAACACTTTTTCAACAAAACGTGCACACACTGAAAATAATAGCCCAAGAGTTGGCTATGTCAAGTCACCTTCAACCAAGGAAGAAGTTAATCTCGATGTTGCTGGCAACTGGTTCGTTACTGCCAGAGCAAAGTTGGAAATGGAAGTAAAGCAAAAGCGAGGTGCAATCGGCTCTCCCAATGCATCTGTCTCACCACAATGCGACAACCATTCTGCCAACAGGCTATATGGTGGGAGATCATATGGTGTTCCACGACGTGGCATCCGTGGTAATTTTGTCCCTCCTATTAAATCCAATGGGAACAACACTGGAAATACAACTTCCCGAAATGCAGGAAAGGGTGATGATTCTTTAGACGAATCAACAAAAAAATGTTTGGAATTCTTGTGTGGTCCTGATGGTGAACTTCCAGAGAAATTAAGGAATTTAGAACCTCGCCTCATTGAGCATGTTAGTAACGAGATTATGGATAAAGCTCCCAATGTCCACTGGGATGACATTGCTGGATTACAACATGCCAAACGTTGTGTCAATGAGATGGTCGTATTTCCTCTGCAACGTCCTGACTTATTTACGGGCTGCCGTTCTCCTGGGAGAGGACTGCTTCTATTTGGTCCACCAGGAACTGGTAAAACAATGATAGGAAAAGCCATAGCTGGGGAGGCAAAGGCAACCTTCTTTTACATATCTGCAAGCTCGTTGACCAGCAAGTGGATTGGTGAAGGTGAAAAGCTAGTAAGAGCACTCTTTGGAGTGGCCAGTTGTCGTCAGCCAGCTGTAATTTTTGTTGATGAAATAGATTCTCTTTTGTCTCAGCGTAAGTCAGACGGCGAGCATGAATCAAGTAGAAGGCTAAAGACACAGTTTCTTATTGAAATGGAAGGCTTTGAAGGTGTTACTGAGCAAATTCTGCTTATAGGGGCAACAAATCGTCCTCAAGAGCTTGATGAAGCAGCACGAAGGAGACTTACTAAAAGGCTATATATTCCTCTACCATCCGCAGATGCAAGAGCTTGGATTGCACGTAGCCTTTTAGAGAAGGATGGATTATTCAATCTATCGGACAAGGAAATGGAAATTATATGTAACTCAACGGATGGTTATTCAGGATCAGACATGAAAAACTTAGTGAATGACGCTTCAATGGGTCCCATAAGAGAGGCAATACATCAAGGTATAGAAATTACAAAGTTGAAAAAGGAGGATATGAGGCCAATAACTCTTCAGGACTTCAAGAATTCCCTAAAAGAGGTGAGGGCTTCTGTTTCACCAAATGAACTTGGAAATTATGAGGAATGGAACAAGAAATTTGGAAGCTTAGCACTTTAG 1857 0.4206 MEESQKCWRKQVDENLKRLHSLLFGVERAIENHDFSSAYILSLRLLGFLDSHSQSEIDQAFIQHIRRQALTYLHTARKSITPVTNSQAFEQVKRSPGPVFGTSGDIDIEKIQNSKYFQALLKPSKEKDCNQLFQVDQSRKQNKAEKEASKEGVQAKLTSLYGKSSLRTKGEERAYGNTFSTKRAHTENNSPRVGYVKSPSTKEEVNLDVAGNWFVTARAKLEMEVKQKRGAIGSPNASVSPQCDNHSANRLYGGRSYGVPRRGIRGNFVPPIKSNGNNTGNTTSRNAGKGDDSLDESTKKCLEFLCGPDGELPEKLRNLEPRLIEHVSNEIMDKAPNVHWDDIAGLQHAKRCVNEMVVFPLQRPDLFTGCRSPGRGLLLFGPPGTGKTMIGKAIAGEAKATFFYISASSLTSKWIGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQRKSDGEHESSRRLKTQFLIEMEGFEGVTEQILLIGATNRPQELDEAARRRLTKRLYIPLPSADARAWIARSLLEKDGLFNLSDKEMEIICNSTDGYSGSDMKNLVNDASMGPIREAIHQGIEITKLKKEDMRPITLQDFKNSLKEVRASVSPNELGNYEEWNKKFGSLAL 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun4777g00004 618 MobiDBLite consensus disorder prediction 271 288 - -
Vifaun4777g00004 618 FunFam Fidgetin-like 1 336 518 - -
Vifaun4777g00004 618 FunFam Fidgetin like 1 508 594 - -
Vifaun4777g00004 618 ProSitePatterns AAA-protein family signature. 479 498 IPR003960 GO:0005524|GO:0016887
Vifaun4777g00004 618 SMART AAA_5 373 509 IPR003593 GO:0016887
Vifaun4777g00004 618 Gene3D - 508 594 - -
Vifaun4777g00004 618 Gene3D - 336 610 IPR027417 -
Vifaun4777g00004 618 MobiDBLite consensus disorder prediction 268 294 - -
Vifaun4777g00004 618 Pfam ATPase family associated with various cellular activities (AAA) 377 507 IPR003959 GO:0005524|GO:0016887
Vifaun4777g00004 618 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 336 613 IPR027417 -
Vifaun4777g00004 618 PANTHER AAA DOMAIN-CONTAINING 154 615 - -
Vifaun4777g00004 618 Pfam Vps4 C terminal oligomerisation domain 580 614 IPR015415 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun4777g00004 314 617 Calmodulin-binding Proteins AT3G56690 32.372 4.69e-41 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun4777g00004 K22766 - gmx:100776024 966.066