Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun4775g00001 ATGGAAATCACCATTCTAGCTTCTTCTTTCTTTCTGATCTTCACAACACTTTTCAACATTTCTTCTCTTGCTCTCACTCAAGATGGTCAAACACTGTTGGAGATCAAAACTACTTGGAATGATACTAAGAATGTTCTTAGCAACTGGCAAGATTTTGATGAGTCTCCTTGTGCATGGACTGGAATCTCATGTCATCCTGATGATGAACGAAGAGTTCGTTCAATAAATTTGCCCTATATGCAGCTTGGAGGAATAATATCTCCCAGCATTGGTAAACTCAGTAGATTGCAGAGATTAGCACTTCATCAGAATGGTTTGCATGGAATCATTCCGGTTGAAATTACCAATTGTACTGAGCTTAGAGCATTGTATTTGAGGGCTAATTATTTCCAAGGAGGCTTACCATCAGGCATTGGAAATCTTTCATTTTTGAATATATTGGATGTTTCAAGCAATTCGTTGAAAGGAGCGATACCTTCCACTATCGGTCGTCTCTCACATTTGCAAGTTTTGAACCTATCCACCAATTTCTTTTCGGGTGAAATCCCTGACATTGGAGTACTAAGCACCTTTCAGAAGAACTCGTTTATTGGAAATTTAGATCTTTGTGGAAGGCAAATCCAAAAGCCATGTCGAACATCACTTGGATTCCCTGTCGTGATACCGCATGATGCTGTAAGCGATGAAGCTTCAGTCCCTCCAAAAAGATCTTCTTCACATTACTTAAAGGCTGTGCTAATCGGGGCAGTGGCAACCTTGGGCCTTGCACTTATCATAACCCTTACATTACTTTGGATTCGTTCATCATCGAAGAAGGAAAGAGCTGTTAGGAAATACACAGAAGTCAAGAAGCAAGTTGATCCATCAGCAAGTGCTAAACTTATTACGTTCCATGGTGACATGCCATACACATCATCTGAAATCATAGAGAAACTGGAGTCTCTTGATGAGGAGGATATCGTAGGGTCAGGAGGGTTTGGTACTGTTTACCGAATGGTGATGAATGATTGTGGTACATTTGCTGTTAAGAGAATTGACCGAAGCCGTGAAGGGTCTGATCAAGTGTTTGAAAGGGAACTAGAGATCTTAGGGAGCATAAAGCACATAAATTTAGTAAACCTTCGCGGTTACTGCAGGCTTCCTTCTTCAAGGCTCCTTATCTATGATTATTTGGCCTTAGGCAGCTTAGATGATCTCTTGCATGAAAATATTGAACGACAACCCTTGAATTGGAATGATCGTCTAAAGATAACCCTTGGTTCTGCCCGCGGTTTGGCATACTTGCACCATGAATGCTCCCCGAAAATTGTGCACCGTGACATAAAATCTAGCAACATCCTTCTTAATGAAAACATGGAGCCTCACATCTCTGATTTTGGTCTTGCAAAGCTCTTAGTCGATGAAGATGCGCATGTTACCACAGTGGTTGCTGGCACGTTTGGCTATTTGGCACCAGAGTATCTACAAAGTGGGAGAGCCACTGAGAAGTCAGATGTATATAGCTTTGGAGTTCTATTACTCGAACTTGTAACCGGAAAGAGGCCTACGGATCCTTCGTTTGTAAAGAGAGGCTTAAATGTTGTTGGTTGGATGAACACATTATTGAAAGAAAACAGATTGGAAGACGTGGTAGACAGAAGATGCACTGATGCGGATGCTGAGACTCTTGAAGTAATTTTGGAGCTAGCAGCAAGATGCACCGATTCAAATGCAGAAGACCGTCCTTCAATGAACCAAGTATTGCAGTTGCTGGAGCAAGAGGTTATGACCCCTTGCCCAAGTGAATTTTACGAGTCACATTCCGATCACTGA 1812 0.4178 MEITILASSFFLIFTTLFNISSLALTQDGQTLLEIKTTWNDTKNVLSNWQDFDESPCAWTGISCHPDDERRVRSINLPYMQLGGIISPSIGKLSRLQRLALHQNGLHGIIPVEITNCTELRALYLRANYFQGGLPSGIGNLSFLNILDVSSNSLKGAIPSTIGRLSHLQVLNLSTNFFSGEIPDIGVLSTFQKNSFIGNLDLCGRQIQKPCRTSLGFPVVIPHDAVSDEASVPPKRSSSHYLKAVLIGAVATLGLALIITLTLLWIRSSSKKERAVRKYTEVKKQVDPSASAKLITFHGDMPYTSSEIIEKLESLDEEDIVGSGGFGTVYRMVMNDCGTFAVKRIDRSREGSDQVFERELEILGSIKHINLVNLRGYCRLPSSRLLIYDYLALGSLDDLLHENIERQPLNWNDRLKITLGSARGLAYLHHECSPKIVHRDIKSSNILLNENMEPHISDFGLAKLLVDEDAHVTTVVAGTFGYLAPEYLQSGRATEKSDVYSFGVLLLELVTGKRPTDPSFVKRGLNVVGWMNTLLKENRLEDVVDRRCTDADAETLEVILELAARCTDSNAEDRPSMNQVLQLLEQEVMTPCPSEFYESHSDH 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun4775g00001 603 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 74 585 - -
Vifaun4775g00001 603 Gene3D Transferase(Phosphotransferase) domain 1 391 594 - -
Vifaun4775g00001 603 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 25 188 - -
Vifaun4775g00001 603 SUPERFAMILY L domain-like 25 211 - -
Vifaun4775g00001 603 ProSitePatterns Protein kinases ATP-binding region signature. 321 343 IPR017441 GO:0005524
Vifaun4775g00001 603 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 391 596 - -
Vifaun4775g00001 603 Pfam Protein kinase domain 317 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifaun4775g00001 603 SMART serkin_6 315 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifaun4775g00001 603 Gene3D Ribonuclease Inhibitor 25 213 IPR032675 -
Vifaun4775g00001 603 Pfam Leucine rich repeat N-terminal domain 27 64 IPR013210 -
Vifaun4775g00001 603 SUPERFAMILY Protein kinase-like (PK-like) 297 585 IPR011009 -
Vifaun4775g00001 603 ProSitePatterns Serine/Threonine protein kinases active-site signature. 436 448 IPR008271 GO:0004672|GO:0006468
Vifaun4775g00001 603 Gene3D Phosphorylase Kinase; domain 1 274 390 - -
Vifaun4775g00001 603 ProSiteProfiles Protein kinase domain profile. 315 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun4775g00001 7 593 Receptor kinase-like Gene Family AT2G35620 49.320 0.0 564
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Vifaun4775g00001 Pkinase 4.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun4775g00001 - - gmx:100797653 1009.98