Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun4740g00001 ATGGGTAAACCTTCCACTTCCTCTTCCTCTTCTTCCAACAGTAGAAGAAGAACTCACAATTCCTCCAATCCTTCTTCCTCTATCACACACCAAAACATTGATGAACAACAACAATTTCATCATCCTGATCTTAACCTTGGATTGAGCATTTCCAGGGGACATTGGCAACCCTTCCAGCAGCAACAAGGCGGTGGTGAAGTTAATGATTGCGGCGGCGATTACGTCAGTTTCTTTGTCAAGGTTTACATGGAAGGGATTCCTATCGGGAGGAAACTCAATTTGTTAGCTCATAATTGCTATCAAGAGTTAGTCAATACTCTTGAACATATGTTCGACACCACAATTCTATGGGGCACTGAGATGGATGGAATGCAATCAGAGAGATGTCATGTGCTGACTTATGAAGATGGTGAAGGAGATTTGATTATGGTTGGTGATGTTCCTTGGGAGATGTTTTTGTCGTCTGTGAAGAGGTTGAAGATCACTAGAGTCGATGCATTCGGATTTTGA 510 0.4235 MGKPSTSSSSSSNSRRRTHNSSNPSSSITHQNIDEQQQFHHPDLNLGLSISRGHWQPFQQQQGGGEVNDCGGDYVSFFVKVYMEGIPIGRKLNLLAHNCYQELVNTLEHMFDTTILWGTEMDGMQSERCHVLTYEDGEGDLIMVGDVPWEMFLSSVKRLKITRVDAFGF 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun4740g00001 169 MobiDBLite consensus disorder prediction 1 29 - -
Vifaun4740g00001 169 Gene3D - 72 168 - -
Vifaun4740g00001 169 Pfam AUX/IAA family 73 163 IPR033389 -
Vifaun4740g00001 169 SUPERFAMILY CAD & PB1 domains 76 161 - -
Vifaun4740g00001 169 ProSiteProfiles PB1 domain profile. 76 166 IPR000270 GO:0005515
Vifaun4740g00001 169 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 66 163 IPR003311 GO:0005634|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun4740g00001 80 161 B3 DNA Binding Superfamily AT4G23980 36.585 5.80e-12 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vifaun4740g00001 AUX_IAA 7.4e-29 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun4740g00001 K14484 - gmx:100781660 205.297