Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun465g00009 ATGAAGATGAAGAATTCCACCATTGCTGATGCATTAGAGTTAGTCGCAGCAGTAAAACTTGAATTTCATGATAAGAATAGAGAAAAATACGAATCTTTTTTACAAATTTTGAGTGATTACAAAGCTCAAAGAATTGATACAAGGGTTGTTAGATTAAAAGTGTATCAATTGCTGAGAGGCCATAAAGATTTAATTTTGAGATTCAACACCTTTGTGCCAACTCAATATGAAATCAAACTTCCATTAGATCGTTACGATAAACAGCAACAATGTCGTCGATTAGAGGTAGAAGATGCATTAGCTTTTATCAAGAGAGTAAGAGATGTGTTTCAAAATAAGAAAAAGTATGATGAGTTTTTAGAAATTCTGAAGGATTTCAAGGCTCAGAGAATTGACACAAGTGTTGTTGTGGAGAGAGTGAAGGAGTTATTTAAAAGGCATACAAATTTAATTTTGGAATTCAATGCCTTCTTGCCAAAGAATTATCGAATCACACGTCCACTTCAGCTTCACACTGGGAAAAAAATGAAGAAGGTTGCAGAGAACTGTGAAATTCCTTGGGACCTGCTTGATATCATCTCCAGGAAACTAGACTTTGACGACCTCTTTGGATTCGCTGGTGTCTGCAAGAGTTGGAGGGAATTTCATAAAATTTATTGGAGAAATTTCATGGCATCCCAAGAACCATTACTTCTTCAAAAGTCTTCCCATGATAAAAAATCTTTTTCCTTCATCAGCATACATGACCAAAGAGTTTATCACTCAAAGACAATCGATTGTTTCTGGAACTTGGCCTATTCTGGGTCTTCTAGCGGATATTTGATCATGACAACCGAGAATAATTCATTTATACTAATGAATCCATTTACAAGAAAAAAGATGGAAATCAATACAACAGCCTTTAAAGTCGAGTTTTCTGTCTTTGCTTACCATGTCTTACTTGCTTTTGGTAAAGGCTTGGAGGAATTTGTCTTAGTGGCTTTATGTAGAAGTTCTAACAGTTTACATGTCTATCAATCTCGAAACTCTGATTGGATTACTTATTCGACAAGGGGAAAACCATGGAAGGTTGTTGACTTTGTTGTTTTGCATAATACTATATATGCTGTAACCGACAAGGCGAGGATAGGTGTACTCAGCTTGAATTCTGCAGATATAAATTTTTTGAAATTGAAGAGTACTCCCAAGGTAACTTCTTCCTCACACCTAAGATTGGTTAGTTGTGACAGAAAACTTCTAATGATTCATATTTTGCCTCGGAGAATATTGAATGTGTACGAGATAGACTTGTCAATCAAGAATTTCGTCGAGATGAAAACTCTGGGCGACATTGCATTATTTTATGCTTCTGGGAAATACTTCTATGCGTTGAGCAACCCGGAAAAATGGGGCTACGAAAGCAATTCTTTGCATGCCATCAATCTTTCATCTACACAATGCATAATGTCTATAGGGAATGATAACAAATTGCCAGAATACATTAGCCATGATAGACTAAGTAATCCTCCTAAAGGAAGACCCTACTTGTTGGATTGGTGTTTTAAACATCTACACTATGAAGTGGATTATTCTCTTGTTGAGTAA 1584 0.358 MKMKNSTIADALELVAAVKLEFHDKNREKYESFLQILSDYKAQRIDTRVVRLKVYQLLRGHKDLILRFNTFVPTQYEIKLPLDRYDKQQQCRRLEVEDALAFIKRVRDVFQNKKKYDEFLEILKDFKAQRIDTSVVVERVKELFKRHTNLILEFNAFLPKNYRITRPLQLHTGKKMKKVAENCEIPWDLLDIISRKLDFDDLFGFAGVCKSWREFHKIYWRNFMASQEPLLLQKSSHDKKSFSFISIHDQRVYHSKTIDCFWNLAYSGSSSGYLIMTTENNSFILMNPFTRKKMEINTTAFKVEFSVFAYHVLLAFGKGLEEFVLVALCRSSNSLHVYQSRNSDWITYSTRGKPWKVVDFVVLHNTIYAVTDKARIGVLSLNSADINFLKLKSTPKVTSSSHLRLVSCDRKLLMIHILPRRILNVYEIDLSIKNFVEMKTLGDIALFYASGKYFYALSNPEKWGYESNSLHAINLSSTQCIMSIGNDNKLPEYISHDRLSNPPKGRPYLLDWCFKHLHYEVDYSLVE 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun465g00009 527 SUPERFAMILY F-box domain 184 227 IPR036047 GO:0005515
Vifaun465g00009 527 FunFam Paired amphipathic helix protein Sin3 10 73 - -
Vifaun465g00009 527 PANTHER SIN3B-RELATED 6 82 IPR039774 GO:0003714
Vifaun465g00009 527 ProSiteProfiles PAH domain profile. 92 161 IPR003822 GO:0006355
Vifaun465g00009 527 SUPERFAMILY PAH2 domain 5 76 IPR036600 GO:0006355
Vifaun465g00009 527 Gene3D Paired amphipathic helix 98 159 IPR036600 GO:0006355
Vifaun465g00009 527 Gene3D Paired amphipathic helix 10 73 IPR036600 GO:0006355
Vifaun465g00009 527 ProSiteProfiles PAH domain profile. 4 75 IPR003822 GO:0006355
Vifaun465g00009 527 Pfam F-box domain 184 214 IPR001810 GO:0005515
Vifaun465g00009 527 Pfam Paired amphipathic helix repeat 28 72 IPR003822 GO:0006355
Vifaun465g00009 527 Pfam Paired amphipathic helix repeat 115 158 IPR003822 GO:0006355
Vifaun465g00009 527 SUPERFAMILY PAH2 domain 91 160 IPR036600 GO:0006355
Vifaun465g00009 527 FunFam Paired amphipathic helix protein Sin3 98 159 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun465g00009 3 87 WRKY Transcription Factor Family AT4G12020 40.659 1.47e-12 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifaun465g00009 PAH 1.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun465g00009 - - mtr:120579360 728.783