Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun4547g00012 ATGAAATTTGGAGGATCAAAATGTATTATAAATATGGATGTTACTTTTGATGAGACCCGTATAGAGAATAAGTACAAATGTCTTGAAGTGAAAGACTCTGAAACTATGGTGGAGAATACACGCTTTGAGATGGAGGTTCCTACTAGAGGGATTGGAGATGTGAGAAAAAATCTAGAAAACATATCATGCCTCTCGTTTTACATGGCACTATCTGATACAAGGCAAAGAAGCATGCCAACTTTGGAAGATCGAGAAACAAGTCAAACCTTAGCTTATCCTAAAATTGTTCTATTAACCAAACCTATTAATCACCCATTTATAGGAGAATGGATGATAAATATCAATACTCATGAAAGACTTAAGAAATTCCCACCAATTAATGAGTTTGGTAACGGTGGGCCTATTAAAAAAGATCTTACTTCTCATGATGGACTCATCACTCTTTTGATGTTTGTGAGCACACACTATGCTGGAAAAGAAGTGACAATGGCGTTTGAAGAAGGTGAAACTTATAAAAAGGTTTTTGGTCCCGTTTTTGTTTATCTTAACACAGATTCAACTCAGAATCATATGTCAACCCTTTGGTCAGATGCTAAGCAACAGTTATCCAAACAAATTCAAATTCAAGATAGGCACTTCAAAGGAGGGAGATTTCAATATACTAATGCTTATGTTGGTCTAGCTTTGCCTGGAGATGCAGGATCATGGCAGAGAGAAAGCAAGGGTTATCAATTTTGGACTCGAGCTAACGTGAAGGGATACTTCAAAATAACTAATATTGTGCCAGGTGACTATAATTTGTATGGTTGGGTCCCCGGATTCATCGGCGATTATAAATATAATGCTACAATCACCATCGCCCCAGGAGGAGCCATAAACTTAGATTCACTTGTGTATAGTCCTCCAAGACATGGACCAACGATTTGGAAAATCGGAATCCCAGATCGATTGGCTTCGGAATTTCATGTGCCAAACCCTTACCCTACTCTCATGAACAAATTACACACCAAACAACACAAAGACAAGTCTAAGTCTATCAATAAAGGAATCGCAATTAAATGTGTCATTGCTGTGGGTTTATTTTTAGCTTTGAGCTTGAGCAGAGGGAATTCTAAACTCCTCTGA 1125 0.3778 MKFGGSKCIINMDVTFDETRIENKYKCLEVKDSETMVENTRFEMEVPTRGIGDVRKNLENISCLSFYMALSDTRQRSMPTLEDRETSQTLAYPKIVLLTKPINHPFIGEWMININTHERLKKFPPINEFGNGGPIKKDLTSHDGLITLLMFVSTHYAGKEVTMAFEEGETYKKVFGPVFVYLNTDSTQNHMSTLWSDAKQQLSKQIQIQDRHFKGGRFQYTNAYVGLALPGDAGSWQRESKGYQFWTRANVKGYFKITNIVPGDYNLYGWVPGFIGDYKYNATITIAPGGAINLDSLVYSPPRHGPTIWKIGIPDRLASEFHVPNPYPTLMNKLHTKQHKDKSKSINKGIAIKCVIAVGLFLALSLSRGNSKLL 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun4547g00012 374 SUPERFAMILY Starch-binding domain-like 240 296 IPR013784 GO:0030246
Vifaun4547g00012 374 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 66 109 - -
Vifaun4547g00012 374 Pfam Rhamnogalacturonate lyase family 67 109 IPR010325 -
Vifaun4547g00012 374 Pfam Polysaccharide lyase family 4, domain II 222 293 IPR029413 -
Vifaun4547g00012 374 CDD RGL4_M 222 297 IPR029413 -
Vifaun4547g00012 374 Gene3D - 217 296 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun4547g00012 67 342 Polysaccharide Lyase AT1G09890 42.724 1.94e-81 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun4547g00012 K18195 - gmx:100776664 372.859