Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun4547g00003 ATGATGAAGATGATGAATGTGTTGAGTAGTAAGAAGAAGTGGCTTGGAGTGATTTTGCAGCTATGTTTCTTGCTATGTACTTGTTCTTCTGAGAAGACATTAAGAGGAGGTTCAAAGAAGGTCAATGGCCTTGGAACATCAACATCTGTAGTTAAGTTGAATACAGATGACCAACGACAGTTGGTTGTTGACAATGGCATTGTTTCTGTGAATTTGTCAAGACCTGAGGGGTACATCATTCAAATATCATATAATGGAATTGACAACATTCTTGAATCTGAAAATGAAGAAGAAGATAGAGGATACTTCGACGTTGTTTGGAATAAACCAGGAAAAAGTGGTAATTTCTCGAGAATCCATGGAACAAACTTTTCAATTATTACAGCTGATGAGAATATGGTGGAGATTTCATTTGTAAGAGTATGGACATCTTCTATGATTGACACAGATGTTCCTATAAACATAGACAAAAGATACATTTTTAGAAGTGGTGATTCTGGATTTTATTCGTATGTGATATTCGATCGACCCGAAGGGATGCCAGCAGTTGAAGTTGATCAAATTAGATATGTTTACAAACTCAATAAAGACATGTTTAAGTACATGGCAATATCTGATACAAGGCAAAGAAGCATGCCAGCAATGAAAGATCGACTAACAGGTCAAATTTTAGCTTATCCAGAAGCTGTTCTATTAACTAAACCAATTGATCCACAATTTAGAGGAGAAGTGGATGATAAATATCAATACTCGTGTGAAAACACAAATAACAATGTTCATGGATGGATTAATTTTGATTCGGATATACCCGTGGGCTTTTGGTTGATAACACCAAGTAATGAGTTTCGTAACGGTGGGCCCATTAAGCAAGATCTTACTTCTCATGTTGGGCCCATCACTCTTTCGATGTTTGTGAGTACACACTATGCTGGAAAGGAAGTAACAATGGCATTTGAAGAAGGTGAAACTTATAAAAAGGTTTTTGGTCCTGTTTTTGTTTATCTCAACACTGATTCAAGTCAAAATGATAATTCAACCCTTTGGTCAGATGCTGTGAAACAGTTATCCAAACAAGTTCAAAGTTGGCCTTATGATTTTGCTAAATCACAAGATTATTTTCCACCCAATCAAAGAGGAACAGTGTTTGGAAGATTACTAGTACAAGATAGGTACTACAAAGGAGGGAGATTTCAATATACTAATGCTTTTGTTGGTTTAGCTTTGCCTGGAGAAGCAGGATCATGGCAGAGAGAAAGTAAAGATTATCAATTTTGGACTCGAGCAAATGCGAAGGGATACTTCAAAATAACTAACATTGTGCCAGGCAACTATAGTTTGTATGGTTGGGTCCCTGGATTCATTGGTGATTATAAATCTAATTCTACAATCACCATCACCCCTGGAGGAGTCATAAACTTGAATTCACTTGTATACAATCCTCCAAGAAATGGACCAACCATTTGGGAAATCGGATTCCCAGATCGATTGGCTTTAGAATTTCACGTTCCAGACCCTTACCCTACTCTTTTGAACAAATTATACTCCGAACAACGCAGAGACAAGTTTAGACAATATGGATTATGGGAACGTTACAGTGATATATATTCAAATGGTGATCTTGTTTACACTGTGGGTATTGACAAGAATATAGATTGGTTTTATGCTCAAGTTACAAGAATAACAGAAAACAAAACATATGAACCAACGACATGGCAGATTATATTTGAACATCAAAATGACATAATCATTGGAAACTATACATTACAACTAGCCTTAGCTAGTGCTGCTGATGCAAACTTAGAGGTTCGTTTCAATGACGCTAGCGTAGAACCACCTCACTTTGCGACAGGGCGGTTTGGAGGAGACAATGCCATAGCAAGACATGGAATTCATGGATTGTATTGGTTGTTTAGCATTGATGTTCCAAGTTATCTTCTTGTGAAAGGACAAAATATCATCTATTTGAAGCAGTCAAGAGCGATTAATCCTTTTCAAGGAGTTATGTATGATTATATTCGGTTAGAACGACCTCCGATAACTTGA 2043 0.3681 MMKMMNVLSSKKKWLGVILQLCFLLCTCSSEKTLRGGSKKVNGLGTSTSVVKLNTDDQRQLVVDNGIVSVNLSRPEGYIIQISYNGIDNILESENEEEDRGYFDVVWNKPGKSGNFSRIHGTNFSIITADENMVEISFVRVWTSSMIDTDVPINIDKRYIFRSGDSGFYSYVIFDRPEGMPAVEVDQIRYVYKLNKDMFKYMAISDTRQRSMPAMKDRLTGQILAYPEAVLLTKPIDPQFRGEVDDKYQYSCENTNNNVHGWINFDSDIPVGFWLITPSNEFRNGGPIKQDLTSHVGPITLSMFVSTHYAGKEVTMAFEEGETYKKVFGPVFVYLNTDSSQNDNSTLWSDAVKQLSKQVQSWPYDFAKSQDYFPPNQRGTVFGRLLVQDRYYKGGRFQYTNAFVGLALPGEAGSWQRESKDYQFWTRANAKGYFKITNIVPGNYSLYGWVPGFIGDYKSNSTITITPGGVINLNSLVYNPPRNGPTIWEIGFPDRLALEFHVPDPYPTLLNKLYSEQRRDKFRQYGLWERYSDIYSNGDLVYTVGIDKNIDWFYAQVTRITENKTYEPTTWQIIFEHQNDIIIGNYTLQLALASAADANLEVRFNDASVEPPHFATGRFGGDNAIARHGIHGLYWLFSIDVPSYLLVKGQNIIYLKQSRAINPFQGVMYDYIRLERPPIT 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun4547g00003 680 SUPERFAMILY Starch-binding domain-like 372 475 IPR013784 GO:0030246
Vifaun4547g00003 680 SUPERFAMILY Galactose-binding domain-like 483 675 IPR008979 -
Vifaun4547g00003 680 CDD RGL4_M 377 476 IPR029413 -
Vifaun4547g00003 680 CDD RGL4_C 488 675 - -
Vifaun4547g00003 680 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 52 678 - -
Vifaun4547g00003 680 Pfam Polysaccharide lyase family 4, domain II 401 472 IPR029413 -
Vifaun4547g00003 680 CDD RGL4_N 54 343 - -
Vifaun4547g00003 680 Pfam Polysaccharide lyase family 4, domain III 486 674 IPR029411 -
Vifaun4547g00003 680 Gene3D - 52 355 IPR014718 GO:0030246
Vifaun4547g00003 680 Gene3D - 374 475 - -
Vifaun4547g00003 680 Gene3D - 483 675 - -
Vifaun4547g00003 680 Pfam Rhamnogalacturonate lyase family 50 244 IPR010325 -
Vifaun4547g00003 680 SUPERFAMILY Galactose mutarotase-like 55 343 IPR011013 GO:0003824|GO:0005975|GO:0030246
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun4547g00003 49 677 Polysaccharide Lyase AT1G09890 54.732 0.0 697
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun4547g00003 K18195 - gmx:100776664 1025