Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun4458g00002 ATGTCAGAGTTGCAGGAAACACAGTCCTCTTCCTATCTATTTCTACTATTTTCCTTCATCCTTCTTTCAGGTAGTGTTGTTGTGGTTGGAGATTCTTTAGACACAGACAAACAGATTCTGTTGAGGTTGAAAAAGTATCTAGACAATAAAACTCTTGCAGACCGAGGAAAGTACATATATTGGAACAGTGATGGTTCGGATTCTAGTCCATGTGAATGGCAAGGAATTTTGTGTAGCGAAGAAAAGAGGGTGATTTCGGTTGATCTTTCTTCCAGTGACATCACTGGAGAGATATTTCAAAGCTTTTCCGAGCTGACTCAGTTAACTCATCTTGATCTTTCGCAGAATACACTCTTTGGAAATTTTCCCGAGGATTTGAGAAACTGTCGCAAGCTGTTGCATCTTAATCTCTCTCATAATATTCTTGAGGGAGAATTGAATGTTACTGGATTCAGAAATTTGATAACACTTGATTTGTCTTTGAATAGATTTCATGGACAAATTGGGCTGTTGGATTTTCCTTCCATTTGTGAAAATTTGGTCACTTTGAATATCTCGGGTAATAACTTAACTGGTGAGATTGGTGATAGTTTTGATAAGTGTTTGAGTTTGAAGTACTTGGATTTGAGTACTAATAAGCTGAGTGGAGGTATATGGAATGGATTTGCAAGGTTGAAGCAGTTTTCTGTTGCTGAGAATCTTCTCAATGGAAACGTTTCGTCCGAAGCTTTTCCGTTGAGTTGTGAGCTTGTGGAGTTAGACCTTTCTCAAAATGGCTTTGTTGGTGAGGCACCAAAGCAAATTTCTAACTGCAAGAATTTAACCATGTTGAATCTTTCAAGCAACAATTTTACTGGAGCTATCCCTGTTGAAATTGGGTCTATTTCATTGCTTAAAGGATTGTACTTGGGAGGAAACAACTTTTCAAGAGATGTTCCTGAGACACTTTTGAAATTGAGTAACTTGGTTTTCTTGGATTTCAGCAGAAACAATTTTGGTGGTGACATACAAAAGATATTTGGAAATTTTACTCAGGTTAGGTTTCTTCTGTTACACTCCAACTCATACACTGGAGGATTGTTATCATCTGGAATTTTCACATTGCCGAATATTACGCGGTTAGATCTTAGCTTCAACGGGTTTTCAGGTCCATTACCTGTTGAGATCTCTCATATGCAAAGTCTAGAACTTTTAATGTTATCATATAACCAATTCAATGGAACTATTCCATCAGAATTTGGAAATATGCATAATTTGCAAGCACTTGATCTTGCTTTCAACCGGTTGAGTGGACCGATTCCTCCAAGCCTTGGAAACTTGACATCACTCTTGTGGTTGATGCTTGCAGACAATTCATTAAACGGAACTATCCCTTCGGAGTTAGGGAACTGTTCTAGTTTGTTATGGTTAAACCTTGCCAACAATAACCTCACTGGAACGTTTCCTCGAGAGATTTCCAAAATTGGAAAGAACGCGATGGAAACATTTGAATTTAATAGGCGAAAAGACGGAATGGTTGCTGGTTCTGGTGAATGTTTAGCAATGAGGAGATGGATTCCTGCAGATTACCCTCCATTCAGCTTTGTGTATGATATTTTAACAAGAAAAAACTGTAGAGGACTTTGGAATAAATTGCTAAAAGGGTATGGAATTTTCCCATTTTGCACACCAGGGTCTTCCCTAAGATTACCTTTGATATCTGGTTATGTTCAGTTAAGTGGAAACAAACTAAGTGGTGAAATTCCTTCAGAGATTGGAACTATGGTGAATTTCAGTTTGTTGCATATGGGATTCAACAGATTCTCTGGGAAACTTCCACCAGAGTTGGGAAATATTCCACTTGTGGTCTTGAACTTGACTACAAACAATTTTTCAGGTGAAATTCCGACGGAAATTGGAAACTTTATTTGCTTGCAAAATCTTGATTTGTCTCGAAACAACTTCTCGGGGAATTTTCCATCAAGTTTGAACAAAGTGTCCGAGCTTAACAAGTTCAACATCTCATACAATCCCTTCATACAAGTACCACGAGAAACGATAAAAACATGGCTCACAACAAAGACCATAAAAAGCCTACAAAATTTCAAAACTCCATCAGATCAATATCTCTTGAGGGATCATGCAAAACACTGCAATGACTCAAGCAGCTCAGGAATAGAATTTCAGCAATGGCTATCTGATTCGGTAAAAGTGATTCGTTTAAACAAGACAGCTTTCACCTATGCAGACATTTTGAAAGCAACAAACACTTTCTCAGAAAACAGAATCATAGGAAGAGGTGGATTTGGAACAGTATACAAGGGATTTTTCTCAGACGGTAGAGAAGTAGCAGTGAAGAAGCTTCTAAGCGAAGGACGCGAAGGCGAAAAGGAATTCCAAGCTGAAATGGAAGTTCTAAGCGGTCATGGTTTCGGTTGGCCCCATCCGAATCTCGTCACACTCTACGGTTGGTGCTTAAACAATTCAGAAAAGATACTTGTTTATGAGTACATAGAAGGCGGAAGCTTAGAAGATCTAGTAACCGATAAAACACGTTTGACATGGAAGAAAAGACTACAAATAGCCATCGATGTTGCTCGTGCGCTTGTCTATTTACACCATGAATGTGACCCTTCAATTGTTCATAGAGACGTGAAGGCTAGTAATGTGTTGCTTGACAAAGAAGGTAAAGCAAAAGTAACCGATTTTGGACTAGCAAGAGTTGTTAATGTTGGTGATAGTCATGTGAGTACAATGGTAGCCGGAACCATTGGATATGTTGCACCTGAATATGGACAAACAATGAAAGCTACTACAAAAGGCGATGTTTATAGTTACGGCGTGTTGGCTATGGAATTGGCTACAGGTAGAAGAGCAGTGGATGGAGATGAAGAATGTCTGGTCGAATGGACGAGGCGTGTTATGATGGGAAGAAAACAACAACAATATCATCATTTGTTGAGTTATTTGGGTTCAGAGGAAATGGTTGAATTGCTATGTATTGGTTTGAAATGTACAAATGAGGCAGCAAATGGTAGGCCAAATATGAAACAAGTTTTGGCTATGCTTATTTTGATATCTAAATCCAATGTTGGAGATTCAAGTGATCATGGACACATTATTTAG 3105 0.3852 MSELQETQSSSYLFLLFSFILLSGSVVVVGDSLDTDKQILLRLKKYLDNKTLADRGKYIYWNSDGSDSSPCEWQGILCSEEKRVISVDLSSSDITGEIFQSFSELTQLTHLDLSQNTLFGNFPEDLRNCRKLLHLNLSHNILEGELNVTGFRNLITLDLSLNRFHGQIGLLDFPSICENLVTLNISGNNLTGEIGDSFDKCLSLKYLDLSTNKLSGGIWNGFARLKQFSVAENLLNGNVSSEAFPLSCELVELDLSQNGFVGEAPKQISNCKNLTMLNLSSNNFTGAIPVEIGSISLLKGLYLGGNNFSRDVPETLLKLSNLVFLDFSRNNFGGDIQKIFGNFTQVRFLLLHSNSYTGGLLSSGIFTLPNITRLDLSFNGFSGPLPVEISHMQSLELLMLSYNQFNGTIPSEFGNMHNLQALDLAFNRLSGPIPPSLGNLTSLLWLMLADNSLNGTIPSELGNCSSLLWLNLANNNLTGTFPREISKIGKNAMETFEFNRRKDGMVAGSGECLAMRRWIPADYPPFSFVYDILTRKNCRGLWNKLLKGYGIFPFCTPGSSLRLPLISGYVQLSGNKLSGEIPSEIGTMVNFSLLHMGFNRFSGKLPPELGNIPLVVLNLTTNNFSGEIPTEIGNFICLQNLDLSRNNFSGNFPSSLNKVSELNKFNISYNPFIQVPRETIKTWLTTKTIKSLQNFKTPSDQYLLRDHAKHCNDSSSSGIEFQQWLSDSVKVIRLNKTAFTYADILKATNTFSENRIIGRGGFGTVYKGFFSDGREVAVKKLLSEGREGEKEFQAEMEVLSGHGFGWPHPNLVTLYGWCLNNSEKILVYEYIEGGSLEDLVTDKTRLTWKKRLQIAIDVARALVYLHHECDPSIVHRDVKASNVLLDKEGKAKVTDFGLARVVNVGDSHVSTMVAGTIGYVAPEYGQTMKATTKGDVYSYGVLAMELATGRRAVDGDEECLVEWTRRVMMGRKQQQYHHLLSYLGSEEMVELLCIGLKCTNEAANGRPNMKQVLAMLILISKSNVGDSSDHGHII 1034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun4458g00002 1034 Pfam Leucine rich repeat N-terminal domain 34 79 IPR013210 -
Vifaun4458g00002 1034 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 248 1016 - -
Vifaun4458g00002 1034 SMART serkin_6 751 1018 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifaun4458g00002 1034 Gene3D Transferase(Phosphotransferase) domain 1 831 1030 - -
Vifaun4458g00002 1034 FunFam Putative LRR receptor-like serine/threonine-protein kinase 343 504 - -
Vifaun4458g00002 1034 ProSitePatterns Serine/Threonine protein kinases active-site signature. 873 885 IPR008271 GO:0004672|GO:0006468
Vifaun4458g00002 1034 ProSitePatterns Protein kinases ATP-binding region signature. 757 780 IPR017441 GO:0005524
Vifaun4458g00002 1034 SMART LRR_typ_2 440 464 IPR003591 -
Vifaun4458g00002 1034 SMART LRR_typ_2 295 319 IPR003591 -
Vifaun4458g00002 1034 SMART LRR_typ_2 416 439 IPR003591 -
Vifaun4458g00002 1034 SMART LRR_typ_2 105 129 IPR003591 -
Vifaun4458g00002 1034 SMART LRR_typ_2 392 415 IPR003591 -
Vifaun4458g00002 1034 Pfam Protein kinase domain 752 1014 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifaun4458g00002 1034 SUPERFAMILY L domain-like 83 290 - -
Vifaun4458g00002 1034 Gene3D Phosphorylase Kinase; domain 1 719 830 - -
Vifaun4458g00002 1034 Gene3D Ribonuclease Inhibitor 172 231 IPR032675 -
Vifaun4458g00002 1034 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 242 336 - -
Vifaun4458g00002 1034 Pfam Leucine rich repeat 249 308 IPR001611 GO:0005515
Vifaun4458g00002 1034 Pfam Leucine rich repeat 369 429 IPR001611 GO:0005515
Vifaun4458g00002 1034 Gene3D Ribonuclease Inhibitor 232 336 IPR032675 -
Vifaun4458g00002 1034 Pfam Leucine Rich repeat 177 196 IPR001611 GO:0005515
Vifaun4458g00002 1034 FunFam Leucine-rich repeat receptor-like protein kinase 831 1026 - -
Vifaun4458g00002 1034 ProSiteProfiles Protein kinase domain profile. 751 1018 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifaun4458g00002 1034 SUPERFAMILY Protein kinase-like (PK-like) 733 1018 IPR011009 -
Vifaun4458g00002 1034 Gene3D Ribonuclease Inhibitor 32 171 IPR032675 -
Vifaun4458g00002 1034 Gene3D Ribonuclease Inhibitor 562 718 IPR032675 -
Vifaun4458g00002 1034 Gene3D Ribonuclease Inhibitor 432 495 IPR032675 -
Vifaun4458g00002 1034 CDD STKc_IRAK 757 1019 - -
Vifaun4458g00002 1034 SUPERFAMILY RNI-like 243 482 - -
Vifaun4458g00002 1034 Gene3D Ribonuclease Inhibitor 337 431 IPR032675 -
Vifaun4458g00002 1034 FunFam Leucine-rich repeat receptor protein kinase MSP1 714 830 - -
Vifaun4458g00002 1034 SUPERFAMILY L domain-like 570 682 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun4458g00002 56 1016 Receptor kinase-like Gene Family AT1G55610 31.617 2.25e-147 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-2 Vifaun4458g00002 Pkinase 5.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun4458g00002 - - vum:124845100 1402.5