Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun4332g00003 ATGGCAATTGTAACGTGCAAGTTATTATTTTCCCTTTATTCTTTTCTCTTTCTTATTATTGTATCTCTAACCAAAGCCCAGCCAAATTTTTTGTACAACCTTTGTATCGACAAAGGAAACTACACAACCAATAGCACATATGAAAACAACCTCAACACCCTTTTGTCAAATCTCACTTCCAACACAGAAATCAACTACGGTTTCTACAATTTCTCCCATGGCCAAAATAACGACAAAGTTAACGCAATTGGACTCTGCAGAGGAGATGTTAAACCAGATGTTTGCCGCAGTTGTCTCAATGATTCAAGAGTTCTTCTCCCAAAGCTGTGTCCAAATCAAAAAGAAGCTATTGGTTGGTATGATAACTGCATGTTACGCTACTCTAACCGATCAATATTCGGTATTATGGAAGAATCACCTGGTTTTTATATGTGGAACCCATACAACGCATCAGAGGTGGATCAATTTAATCAAGTTCTCGGGAACTTGATGACGAAATTGATGGAAAAAGCTGCATCAAGTGATTCTCGACGTAAGTTTGCCACGGATAATGACACTGATGTGAATTTTCAACCCATATACGGTCTTGTTCAGTGTACACCTGATTTGTCATTTCAAGATTGTAGTGATTGTTTAGAAGATGCTATCTCAGAAATTCCTAATTGTTGTAATAATAAGAAAGGTGGTAGAGTTATTAAACCTAGTTGTAATATTAGATTTGAATCCTATCTCTTCTATGATCCCACGCCTATAATAGACCCAGAGAAAATCTCTCCTCCACCACAAGGAAAAAACAAATCATCGCATACTACCATCGCCATAGTAGTGTCTATTGTTGTCGCCGTTGTTGTTGTTGCTCTCCTAAGTTTCATTTGCATATACTCAATGAGAAGTAAGCCAAAGATAAATCTTGAAGAAGTAGAACAAGATCACGATGATATTGAAATCGAGGAGTCATTGCAATTCAATTTTGACACAATACAAGTTGCAACAAATAACTTTTCTGAAGCTAATAAACTCGGACAAGGCGGATTTGGAATTGTTTATCAAGGGGAACTCTCTACTGGACAAGTGATTGCGGTAAAACGGTTGTCAAAAGGTTCTGGACAAGGAGATAGTGAATTTAAGAATGAAGTGCTTTTACTGGCTAAACTTCAACATCGAAATTTAGTTCGACTACTTGGTTTTTGTTTAGAAGGAAAAGAAAGAATACTTATCTACGAATTTGTTCCTAATAAAAGCCTCGACTACTTTTTATTTGATCCACTAAAGAGATCACAATTAGAGTGGGAAAGACGATATAAAATCATTCAAGGTATTGTTAGAGGACTTCTTTACCTTCACGAGGATTCTCGACTTCGCATTATACATCGTGATCTTAAAGCAAGTAATATTCTCTTAGACAACAATATGAATCCTAAAATATCAGATTTTGGTATGGCCCGATTATTACTTGTTGATCAAACTCAAGTAAATACGAATAAAGTCGTTGGAACATATGGATATATGGCTCCTGAATATGCAATGTTTGGACAATTTTCAATAAAATCAGATGTTTTTAGTTTTGGTATATTAGTTCTAGAAATTACAAGTGGTTTGAAAGTTTGTGGCGATCTTCATGAGCAGAGTATGGAAGACTTACTTAGTTTTGTGTGGAGAAACTGGAGGGAGGGTACAATCACAAATATAATCGACCCATCACTAAATAATGATTCACGAAATGAAATAATGAGATGCATTCACATTGGTTTACTATGTGTTCAAGAAAATGAGGTTGAAAGACCAACTATGGCAACTATTGCACTCATGCTTAGTAGTTATTCAGTCTCTTTAGCGCTCCCTTTGGAGCCTGCTTCTTTTATAGGAGGCAGAACTAGAAGTATTTCAATTTCAGACACGCAAATCTAG 1908 0.3606 MAIVTCKLLFSLYSFLFLIIVSLTKAQPNFLYNLCIDKGNYTTNSTYENNLNTLLSNLTSNTEINYGFYNFSHGQNNDKVNAIGLCRGDVKPDVCRSCLNDSRVLLPKLCPNQKEAIGWYDNCMLRYSNRSIFGIMEESPGFYMWNPYNASEVDQFNQVLGNLMTKLMEKAASSDSRRKFATDNDTDVNFQPIYGLVQCTPDLSFQDCSDCLEDAISEIPNCCNNKKGGRVIKPSCNIRFESYLFYDPTPIIDPEKISPPPQGKNKSSHTTIAIVVSIVVAVVVVALLSFICIYSMRSKPKINLEEVEQDHDDIEIEESLQFNFDTIQVATNNFSEANKLGQGGFGIVYQGELSTGQVIAVKRLSKGSGQGDSEFKNEVLLLAKLQHRNLVRLLGFCLEGKERILIYEFVPNKSLDYFLFDPLKRSQLEWERRYKIIQGIVRGLLYLHEDSRLRIIHRDLKASNILLDNNMNPKISDFGMARLLLVDQTQVNTNKVVGTYGYMAPEYAMFGQFSIKSDVFSFGILVLEITSGLKVCGDLHEQSMEDLLSFVWRNWREGTITNIIDPSLNNDSRNEIMRCIHIGLLCVQENEVERPTMATIALMLSSYSVSLALPLEPASFIGGRTRSISISDTQI 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun4332g00003 635 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 31 623 - -
Vifaun4332g00003 635 Gene3D Phosphorylase Kinase; domain 1 296 409 - -
Vifaun4332g00003 635 Pfam Salt stress response/antifungal 151 243 IPR002902 -
Vifaun4332g00003 635 Pfam Salt stress response/antifungal 38 129 IPR002902 -
Vifaun4332g00003 635 FunFam Cysteine-rich receptor-like protein kinase 10 140 245 - -
Vifaun4332g00003 635 Gene3D Transferase(Phosphotransferase) domain 1 410 612 - -
Vifaun4332g00003 635 CDD STKc_IRAK 340 604 - -
Vifaun4332g00003 635 FunFam cysteine-rich receptor-like protein kinase 10 410 611 - -
Vifaun4332g00003 635 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 28 132 - -
Vifaun4332g00003 635 SMART serkin_6 334 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifaun4332g00003 635 FunFam Cysteine-rich receptor-like protein kinase 10 297 409 - -
Vifaun4332g00003 635 Gene3D - 141 245 IPR038408 -
Vifaun4332g00003 635 Gene3D - 27 131 IPR038408 -
Vifaun4332g00003 635 Pfam Protein tyrosine and serine/threonine kinase 337 601 IPR001245 GO:0004672|GO:0006468
Vifaun4332g00003 635 ProSiteProfiles Gnk2-homologous domain profile. 29 132 IPR002902 -
Vifaun4332g00003 635 ProSitePatterns Protein kinases ATP-binding region signature. 340 362 IPR017441 GO:0005524
Vifaun4332g00003 635 SUPERFAMILY Protein kinase-like (PK-like) 318 604 IPR011009 -
Vifaun4332g00003 635 ProSiteProfiles Protein kinase domain profile. 334 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifaun4332g00003 635 ProSiteProfiles Gnk2-homologous domain profile. 138 245 IPR002902 -
Vifaun4332g00003 635 ProSitePatterns Serine/Threonine protein kinases active-site signature. 455 467 IPR008271 GO:0004672|GO:0006468
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun4332g00003 11 614 Receptor kinase-like Gene Family AT4G05200 50.080 0.0 615
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifaun4332g00003 PK_Tyr_Ser-Thr 4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun4332g00003 - - gmx:100791056 804.283